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Report for CCDS43203.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43203.1 Public Homo sapiens 4 CTBP1 24 110 108 CCDS HistoryNCBI Gene:1487Re-query CCDS DB by CCDS ID:43203.1Re-query CCDS DB by GeneID:1487See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43203.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000382952.8 ENSP00000372411.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000382952.8Link to Ensembl Protein Viewer:ENSP00000372411.3Re-query CCDS DB by Nucleotide ID:ENST00000382952Re-query CCDS DB by Protein ID:ENSP00000372411
Original member Current member EBI ENST00000703138.1 ENSP00000515195.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703138.1Link to Ensembl Protein Viewer:ENSP00000515195.1Re-query CCDS DB by Nucleotide ID:ENST00000703138Re-query CCDS DB by Protein ID:ENSP00000515195
Original member Current member EBI ENST00000703163.1 ENSP00000515211.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000703163.1Link to Ensembl Protein Viewer:ENSP00000515211.1Re-query CCDS DB by Nucleotide ID:ENST00000703163Re-query CCDS DB by Protein ID:ENSP00000515211
Original member Current member NCBI NM_001012614.2 NP_001012632.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001012614.2Link to Protein Sequence:NP_001012632.1Re-query CCDS DB by Nucleotide ID:NM_001012614Re-query CCDS DB by Protein ID:NP_001012632Link to BLAST:NP_001012632.1
Original member Current member NCBI NM_001377191.1 NP_001364120.1 Accepted alive Link to Nucleotide Sequence:NM_001377191.1Link to Protein Sequence:NP_001364120.1Re-query CCDS DB by Nucleotide ID:NM_001377191Re-query CCDS DB by Protein ID:NP_001364120Link to BLAST:NP_001364120.1
Original member Current member NCBI NM_001377192.1 NP_001364121.1 Accepted alive Link to Nucleotide Sequence:NM_001377192.1Link to Protein Sequence:NP_001364121.1Re-query CCDS DB by Nucleotide ID:NM_001377192Re-query CCDS DB by Protein ID:NP_001364121Link to BLAST:NP_001364121.1
Original member Current member NCBI NM_001377193.1 NP_001364122.1 Accepted alive Link to Nucleotide Sequence:NM_001377193.1Link to Protein Sequence:NP_001364122.1Re-query CCDS DB by Nucleotide ID:NM_001377193Re-query CCDS DB by Protein ID:NP_001364122Link to BLAST:NP_001364122.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012632.1 429 Q13363-2 429 100% 0 0
NP_001364120.1 429 Q13363-2 429 100% 0 0
NP_001364121.1 429 Q13363-2 429 100% 0 0
NP_001364122.1 429 Q13363-2 429 100% 0 0

Chromosomal Locations for CCDS 43203.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 1212240 1212423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1212913 1213030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1213478 1213605 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1214343 1214473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1215991 1216205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1225360 1225566 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1228199 1228343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1238183 1238337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 1241325 1241331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1290 nt):
ATGTCAGGCGTCCGACCTCCGATCATGAACGGGCCCCTGCACCCGCGGCCCCTGGTGGCATTGCTGGATG
GCCGGGACTGCACAGTGGAGATGCCCATCCTGAAGGACGTGGCCACTGTGGCCTTCTGCGACGCGCAGTC
CACGCAGGAGATCCATGAGAAGGTCCTGAACGAGGCTGTGGGGGCCCTGATGTACCACACCATCACTCTC
ACCAGGGAGGACCTGGAGAAGTTCAAAGCCCTCCGCATCATCGTCCGGATTGGCAGTGGTTTTGACAACA
TCGACATCAAGTCGGCCGGGGATTTAGGCATTGCCGTCTGCAACGTGCCCGCGGCGTCTGTGGAGGAGAC
GGCCGACTCGACGCTGTGCCACATCCTGAACCTGTACCGGCGGGCCACCTGGCTGCACCAGGCGCTGCGG
GAGGGCACACGAGTCCAGAGCGTCGAGCAGATCCGCGAGGTGGCGTCCGGCGCTGCCAGGATCCGCGGGG
AGACCTTGGGCATCATCGGACTTGGTCGCGTGGGGCAGGCAGTGGCGCTGCGGGCCAAGGCCTTCGGCTT
CAACGTGCTCTTCTACGACCCTTACTTGTCGGATGGCGTGGAGCGGGCGCTGGGGCTGCAGCGTGTCAGC
ACCCTGCAGGACCTGCTCTTCCACAGCGACTGCGTGACCCTGCACTGCGGCCTCAACGAGCACAACCACC
ACCTCATCAACGACTTCACCGTCAAGCAGATGAGACAAGGGGCCTTCCTGGTGAACACAGCCCGGGGTGG
CCTGGTGGATGAGAAGGCGCTGGCCCAGGCCCTGAAGGAGGGCCGGATCCGCGGCGCGGCCCTGGATGTG
CACGAGTCGGAACCCTTCAGCTTTAGCCAGGGCCCTCTGAAGGATGCACCCAACCTCATCTGCACCCCCC
ATGCTGCATGGTACAGCGAGCAGGCATCCATCGAGATGCGAGAGGAGGCGGCACGGGAGATCCGCAGAGC
CATCACAGGCCGGATCCCAGACAGCCTGAAGAACTGTGTCAACAAGGACCATCTGACAGCCGCCACCCAC
TGGGCCAGCATGGACCCCGCCGTCGTGCACCCTGAGCTCAATGGGGCTGCCTATAGGTACCCTCCGGGCG
TGGTGGGCGTGGCCCCCACTGGCATCCCAGCTGCTGTGGAAGGTATCGTCCCCAGCGCCATGTCCCTGTC
CCACGGCCTGCCCCCTGTGGCCCACCCGCCCCACGCCCCTTCTCCTGGCCAAACCGTCAAGCCCGAGGCG
GATAGAGACCACGCCAGTGACCAGTTGTAG

Translation (429 aa):
MSGVRPPIMNGPLHPRPLVALLDGRDCTVEMPILKDVATVAFCDAQSTQEIHEKVLNEAVGALMYHTITL
TREDLEKFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALR
EGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYLSDGVERALGLQRVS
TLQDLLFHSDCVTLHCGLNEHNHHLINDFTVKQMRQGAFLVNTARGGLVDEKALAQALKEGRIRGAALDV
HESEPFSFSQGPLKDAPNLICTPHAAWYSEQASIEMREEAAREIRRAITGRIPDSLKNCVNKDHLTAATH
WASMDPAVVHPELNGAAYRYPPGVVGVAPTGIPAAVEGIVPSAMSLSHGLPPVAHPPHAPSPGQTVKPEA
DRDHASDQL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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