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Report for CCDS43475.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
43475.1 Public Homo sapiens 6 HMGCLL1 24 110 108 CCDS HistoryNCBI Gene:54511Re-query CCDS DB by CCDS ID:43475.1Re-query CCDS DB by GeneID:54511See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 43475.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000398661.6 ENSP00000381654.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000398661.6Link to Ensembl Protein Viewer:ENSP00000381654.2Re-query CCDS DB by Nucleotide ID:ENST00000398661Re-query CCDS DB by Protein ID:ENSP00000381654
Original member Current member NCBI NM_019036.3 NP_061909.2 Accepted alive Link to Nucleotide Sequence:NM_019036.3Link to Protein Sequence:NP_061909.2Re-query CCDS DB by Nucleotide ID:NM_019036Re-query CCDS DB by Protein ID:NP_061909Link to BLAST:NP_061909.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061909.2 370 Q8TB92-1 370 100% 0 0

Chromosomal Locations for CCDS 43475.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 55435662 55435763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55439434 55439559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55495419 55495607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55499236 55499299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55514048 55514196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55516508 55516603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55541729 55541836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55542060 55542140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55577078 55577167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 55578948 55579055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGGGGAATGTGCCATCCGCGGTGAAGCACTGCCTCAGCTACCAGCAGCTTCTCCGGGAGCATCTCTGGA
TCGGGGATTCAGTGGCAGGGGCGCTCGACCCCGCGCAGACTTCTCTTCTAACAAACCTTCACTGCTTTCA
GCCCGATGTCTCTGGCTTCTCAGTCTCCTTGGCAGGCACGGTGGCTTGTATCCACTGGGAAACATCCCAG
TTATCTGGACTCCCTGAGTTTGTTAAAATAGTAGAAGTTGGGCCTAGGGATGGATTGCAGAATGAAAAGG
TTATAGTTCCTACAGATATAAAAATTGAATTTATCAATCGACTTTCCCAAACTGGCTTGTCTGTAATAGA
AGTGACTAGCTTTGTGTCTTCCAGATGGGTACCACAGATGGCTGATCACACTGAAGTAATGAAAGGCATT
CATCAATATCCAGGAGTTCGCTATCCTGTCCTTACTCCTAATCTTCAGGGTTTTCACCATGCTGTTGCTG
CTGGAGCTACTGAGATATCAGTTTTTGGAGCTGCATCTGAATCCTTTAGCAAGAAGAATATTAACTGTTC
CATTGAAGAAAGTATGGGAAAATTTGAGGAGGTTGTTAAGTCTGCAAGACACATGAATATTCCAGCACGA
GGGTATGTGTCTTGTGCTCTGGGCTGTCCATATGAAGGAAGTATTACACCGCAAAAAGTGACAGAAGTGT
CTAAGAGATTGTACGGCATGGGTTGTTATGAGATCTCTCTAGGAGACACAATTGGAGTGGGAACTCCAGG
AAGTATGAAAAGAATGTTGGAAAGTGTGATGAAAGAAATCCCACCAGGTGCTCTTGCTGTTCACTGTCAT
GACACATACGGACAAGCCTTAGCAAATATCCTTACGGCCCTTCAGATGGGAATTAATGTGGTGGACTCCG
CAGTATCCGGATTAGGTGGCTGCCCTTATGCAAAAGGTGCTTCTGGGAATGTAGCCACTGAGGATTTGAT
ATATATGCTTAATGGCCTGGGGCTCAATACAGGTGTGAATCTATACAAAGTGATGGAAGCTGGTGACTTT
ATTTGCAAAGCTGTGAATAAAACCACAAACTCTAAAGTAGCACAAGCCTCCTTCAATGCTTGA

Translation (370 aa):
MGNVPSAVKHCLSYQQLLREHLWIGDSVAGALDPAQTSLLTNLHCFQPDVSGFSVSLAGTVACIHWETSQ
LSGLPEFVKIVEVGPRDGLQNEKVIVPTDIKIEFINRLSQTGLSVIEVTSFVSSRWVPQMADHTEVMKGI
HQYPGVRYPVLTPNLQGFHHAVAAGATEISVFGAASESFSKKNINCSIEESMGKFEEVVKSARHMNIPAR
GYVSCALGCPYEGSITPQKVTEVSKRLYGMGCYEISLGDTIGVGTPGSMKRMLESVMKEIPPGALAVHCH
DTYGQALANILTALQMGINVVDSAVSGLGGCPYAKGASGNVATEDLIYMLNGLGLNTGVNLYKVMEAGDF
ICKAVNKTTNSKVAQASFNA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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