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Report for CCDS44658.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44658.1 Public Homo sapiens 11 CARNS1 24 110 108 CCDS HistoryNCBI Gene:57571Re-query CCDS DB by CCDS ID:44658.1Re-query CCDS DB by GeneID:57571See the combined annotation on chromosome 11 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44658.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000307823.7 ENSP00000308268.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000307823.7Link to Ensembl Protein Viewer:ENSP00000308268.3Re-query CCDS DB by Nucleotide ID:ENST00000307823Re-query CCDS DB by Protein ID:ENSP00000308268
Original member Current member NCBI NM_001394578.1 NP_001381507.1 Accepted alive Link to Nucleotide Sequence:NM_001394578.1Link to Protein Sequence:NP_001381507.1Re-query CCDS DB by Nucleotide ID:NM_001394578Re-query CCDS DB by Protein ID:NP_001381507Link to BLAST:NP_001381507.1
Original member Current member NCBI NM_001394579.1 NP_001381508.1 Accepted alive Link to Nucleotide Sequence:NM_001394579.1Link to Protein Sequence:NP_001381508.1Re-query CCDS DB by Nucleotide ID:NM_001394579Re-query CCDS DB by Protein ID:NP_001381508Link to BLAST:NP_001381508.1
Original member Current member NCBI NM_020811.2 NP_065862.1 Accepted alive Link to Nucleotide Sequence:NM_020811.2Link to Protein Sequence:NP_065862.1Re-query CCDS DB by Nucleotide ID:NM_020811Re-query CCDS DB by Protein ID:NP_065862Link to BLAST:NP_065862.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001381507.1 827 A5YM72-1 827 100% 0 0
NP_001381508.1 827 A5YM72-1 827 100% 0 0
NP_065862.1 827 A5YM72-1 827 100% 0 0

Chromosomal Locations for CCDS 44658.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 11 (NC_000011.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11See the combined annotation on chromosome 11 in Sequence Viewer

Chromosome Start Stop Links
11 67418761 67419243 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67419487 67419661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67419753 67419838 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67420609 67420840 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67420939 67421219 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11
11 67423375 67424601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 11Link to Ensembl Genome Browser on chromosome 11

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2484 nt):
ATGCTCCTTTGCCTGTCCCCTGCTTGGCTGATGAAGGTGCCAGCACCCGGGCAGCCGGGTGAGGCAGCCC
TGCTAGTCTCCAAGGCTGTGAGCTTCCACCCTGGGGGCCTGACATTCCTGGATGACTTTGTCCCCCCGCG
CCGTGCCACCTACTTTTTGGCAGGCCTGGGCCTGGGGCCTGGCCGGGGCCGAGAGGCAGCAGAACTCGCC
CGTGACCTGACCTGCCCCACAGGAGCTTCGGCTGAGCTGGCCCGGCTGCTGGAGGACCGGCTGCTGACAA
GGCAGTTGCTGGCCCAGCAGGGTGGTGTGGCTGTGCCAGCAACCCTGGCTTTCACCTACAAGCCGCCGGG
GCTGCTGCGGGGAGGGGATGCCAGCCTAGGGCTACGGCTGGTGGAGCTGAGTGGCAAAGAGGGCCAGGAG
ACGCTGGTGAAAGAGGAAGTGGAGGCTTTTCTGCGCTCCGAGGCCCTGGGTGATATCCTGCAGGTAGCTG
TGAAGCTCAGTGGCTGGCGCTGGCGGGGGCGGCAGGCATGGCGTCTGCACCCGCGGGCAGAGCTGGGTGC
AGTGGTGGACACAGTGCTGGCGCTGCTGGAGAAGCTGGAGGAGGAGGAGAGTGTCCTGGTGGAGGCTGTG
TACCCACCTGCCCAGCTGCCCTGCTCAGATGGTCCTTCACCCGGCCCCGGCCTGGCCGTGCGAATCTGTG
CTGTGGTGTGTCGGACACAGGGTGATAGGCCACTGCTGAGCAAGGTGGTGTGCGGCGTGGGCCGCGGGGA
CCGCCCTCTACGGCACCACAACTCCCTGCCGAGGACGCTGGAGGTGGCGCTGGCCCAGTGCGGCCTGGGC
GAGGAGGCGCAGGTGGCGGCTGTGCGGCAGCGCGTCAAGGCGGCGGCCGAGGCCGCGCTGGCCGCCGTGC
TGGCTCTGGAGGCCGGCCTGAGTGCCGAGCAGCGCGGCGGGCGCCGGGCGCACACGGACTTCCTGGGCGT
GGATTTCGCGCTGACAGCGGCCGGCGGCGTGCTGACCCCAGTGGCCCTGGAGCTGAACGGCGGCCTGTGT
CTGGAGGCGTGCGGCGCGCTGGAGGGGCTGTGGGCCGCGCCGCGGCTGGGGCCGGCGGCCGACGAGGCGG
TGGCGGCGCCGCTGGTGGAGACCATGCTTCGGCGGTCGGCGCGCTGCCTCATGGAGGGAAAACAGCTGCT
GGTGGTCGGCGCTGGCGGCGTCAGCAAGAAGTTCGTGTGGGAGGCGGCGCGCGACTACGGGCTCCAGCTG
CACCTCGTGGAGTCAGACCCCAACCACTTTGCATCCCAGTTGGTACAGACCTTCATCCACTTTGACATGA
CAGAGCACCGGAGGGATGAGGAGAACGCACGGCTGCTGGCAGAGTTGGTGCGGGCTCGCGGCCTCAAGCT
AGATGGCTGCTTCTCCTACTGGGATGACTGCCTGGTGCTCACAGCCCTGCTCTGCCAGGAGCTAGGTCTG
CCCTGCAGCTCCCCAGCTGCCATGCGCCTGGCTAAGCAGAAGAGCCTCACCCAGCTGCACCTGTTGCACC
ACCATGGCCCACCCTGGCCTGCGCCCTCCCTCCATGCTGTGCCCTGCTGCCCACTGGAGAGTGAGGCTGA
TGTGGAGAGGGCCGTGCACCAGGTACCCCTGCCAGGTGTCATGAAGCTGGAGTTCGGGGCAGGTGCAGTG
GGTGTCCGGCTGGTAGAGGATGCGCCACAGTGCCATGAGCACTTTTCCCGGATTACCCGAGACTTGCAGG
GCGAGGCCGACCACCCAGGCATTGGGCTGGGCTGGGGCAATGCCATGCTGCTGATGGAGTTTGTGGAGGG
CACCGAGCACGACGTGGACCTGGTGTTGTTTGGTGGGCGGTTGCTGGCTGCCTTTGTCTCCGACAATGGC
CCTACGAGGCTGCCTGGCTTCACTGAGACGGCGGCCTGCATGCCCACCGGGCTGGCACCAGAGCAGGAGG
CACAGATGGTTCAGGCAGCCTTCCGCTGTTGCCTGGGCTGCGGGTTGCTCGATGGAGTCTTCAACGTGGA
GCTCAAGCTGACCGGGGCTGGGCCTCGGCTTATCGAGATCAACCCCCGCATGGGTGGCTTCTACCTGCGT
GATTGGATCCTGGAGCTCTATGGTGTTGACCTGCTGCTGGCTGCTGTTATGGTGGCCTGTGGCTTGCGTC
CTGCCCTGCCCACCCGCCCACGTGCTCGTGGCCATCTGGTGGGCGTCATGTGCCTTGTGTCCCAGCACCT
GCAGGCCCTGAGTTCCACCGCCAGCCGTGAGACCCTGCAGGCCCTGCACGACCGTGGACTGCTACGCCTC
AATCTGCTGGAGGAGGCCCTGGTGCCTGGCGAGTATGAGGAGCCCTACTGCAGTGTGGCCTGTGCCGGAC
CCAGCCCCACCGAGGCCCGTCTCCGCCTGCTGGGCCTCTGCCAGGGCCTGGGCATCGATGGGCCCAGCTA
CCCTGTTGCCCACTTCCTGTCTCACTTCAAATAG

Translation (827 aa):
MLLCLSPAWLMKVPAPGQPGEAALLVSKAVSFHPGGLTFLDDFVPPRRATYFLAGLGLGPGRGREAAELA
RDLTCPTGASAELARLLEDRLLTRQLLAQQGGVAVPATLAFTYKPPGLLRGGDASLGLRLVELSGKEGQE
TLVKEEVEAFLRSEALGDILQVAVKLSGWRWRGRQAWRLHPRAELGAVVDTVLALLEKLEEEESVLVEAV
YPPAQLPCSDGPSPGPGLAVRICAVVCRTQGDRPLLSKVVCGVGRGDRPLRHHNSLPRTLEVALAQCGLG
EEAQVAAVRQRVKAAAEAALAAVLALEAGLSAEQRGGRRAHTDFLGVDFALTAAGGVLTPVALELNGGLC
LEACGALEGLWAAPRLGPAADEAVAAPLVETMLRRSARCLMEGKQLLVVGAGGVSKKFVWEAARDYGLQL
HLVESDPNHFASQLVQTFIHFDMTEHRRDEENARLLAELVRARGLKLDGCFSYWDDCLVLTALLCQELGL
PCSSPAAMRLAKQKSLTQLHLLHHHGPPWPAPSLHAVPCCPLESEADVERAVHQVPLPGVMKLEFGAGAV
GVRLVEDAPQCHEHFSRITRDLQGEADHPGIGLGWGNAMLLMEFVEGTEHDVDLVLFGGRLLAAFVSDNG
PTRLPGFTETAACMPTGLAPEQEAQMVQAAFRCCLGCGLLDGVFNVELKLTGAGPRLIEINPRMGGFYLR
DWILELYGVDLLLAAVMVACGLRPALPTRPRARGHLVGVMCLVSQHLQALSSTASRETLQALHDRGLLRL
NLLEEALVPGEYEEPYCSVACAGPSPTEARLRLLGLCQGLGIDGPSYPVAHFLSHFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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