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Report for CCDS44957.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44957.1 Public Homo sapiens 12 SLC17A8 24 110 108 CCDS HistoryNCBI Gene:246213Re-query CCDS DB by CCDS ID:44957.1Re-query CCDS DB by GeneID:246213See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44957.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392989.3 ENSP00000376715.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392989.3Link to Ensembl Protein Viewer:ENSP00000376715.3Re-query CCDS DB by Nucleotide ID:ENST00000392989Re-query CCDS DB by Protein ID:ENSP00000376715
Original member Current member NCBI NM_001145288.2 NP_001138760.1 Accepted alive Link to Nucleotide Sequence:NM_001145288.2Link to Protein Sequence:NP_001138760.1Re-query CCDS DB by Nucleotide ID:NM_001145288Re-query CCDS DB by Protein ID:NP_001138760Link to BLAST:NP_001138760.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138760.1 539 Q8NDX2-2 539 100% 0 0

Chromosomal Locations for CCDS 44957.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100357392 100357492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100380701 100380953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100391001 100391119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100393369 100393483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100396330 100396417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100401777 100401863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100402340 100402479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100404038 100404170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100412770 100412880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100418029 100418156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100419815 100420159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1620 nt):
ATGCCTTTTAAAGCATTTGATACCTTCAAAGAAAAAATTCTGAAACCTGGGAAGGAAGGAGTGAAGAACG
CCGTGGGAGATTCTTTGGGAATTTTACAAAGAAAAATCGATGGGACAACTGAGGAAGAAGATAACATTGA
GCTGAATGAAGAAGGAAGGCCGGTGCAGACGTCCAGGCCAAGCCCCCCACTCTGCGACTGCCACTGCTGC
GGCCTCCCCAAGCGTTACATCATTGCTATCATGAGTGGGCTGGGATTCTGCATTTCCTTTGGGATCCGGT
GCAATCTTGGAGTTGCCATTGTGGAAATGGTCAACAATAGCACCGTATATGTTGATGGAAAACCGGAAAT
TCAGACAGCACAGTTTAACTGGGATCCAGAAACAGTGGGCCTTATCCATGGATCTTTTTTCTGGGGCTAT
ATTATGACACAAATTCCAGGTGGTTTCATTTCAAACAAGTTTGCTGCTAACAGGGTCTTTGGAGCTGCCA
TCTTCTTAACATCGACTCTGAACATGTTTATTCCCTCTGCAGCCAGAGTGCATTACGGATGCGTCATGTG
TGTCAGAATTCTGCAAGGTTTAGTGGAGGGTGTGACCTACCCAGCCTGCCATGGGATGTGGAGTAAGTGG
GCACCACCTTTGGAGAGAAGCCGACTGGCCACAACCTCTTTTTGTGGTTCCTATGCAGGGGCAGTGGTTG
CCATGCCCCTGGCTGGGGTGTTGGTGCAGTACATTGGATGGTCCTCTGTCTTTTATATTTATGGCATGTT
TGGGATTATTTGGTACATGTTTTGGCTGTTGCAGGCCTATGAGTGCCCAGCAGCTCATCCAACAATATCC
AATGAGGAGAAGACCTATATAGAGACAAGCATAGGAGAGGGGGCCAACGTGGTTAGTCTAAGTGTGGGTC
TCTTGTCAGCAGTCCCACACATGGTTATGACAATCGTTGTACCTATTGGAGGACAATTGGCTGATTATTT
AAGAAGCAGACAAATTTTAACCACAACTGCTGTCAGAAAAATCATGAACTGTGGAGGTTTTGGCATGGAG
GCAACCTTACTCCTGGTGGTTGGCTTTTCGCATACCAAAGGGGTGGCTATCTCCTTTCTGGTACTTGCTG
TAGGATTTAGTGGCTTCGCTATTTCAGGTTTTAATGTCAACCACCTGGACATTGCCCCACGCTATGCCAG
CATTCTCATGGGGATCTCAAACGGAGTGGGAACCCTCTCTGGAATGGTCTGTCCCCTCATTGTCGGTGCA
ATGACCAGGCACAAGACCCGTGAAGAATGGCAGAATGTGTTCCTCATAGCTGCCCTGGTGCATTACAGTG
GTGTGATCTTCTATGGGGTCTTTGCTTCTGGGGAGAAACAGGAGTGGGCTGACCCAGAGAATCTCTCTGA
GGAGAAATGTGGAATCATTGACCAGGACGAATTAGCTGAGGAGATAGAACTCAACCATGAGAGTTTTGCG
AGTCCCAAAAAGAAGATGTCTTATGGAGCCACCTCCCAGAATTGTGAAGTCCAGAAGAAGGAATGGAAAG
GACAGAGAGGAGCGACCCTTGATGAGGAAGAGCTGACATCCTACCAGAATGAAGAGAGAAACTTCTCAAC
TATATCCTAA

Translation (539 aa):
MPFKAFDTFKEKILKPGKEGVKNAVGDSLGILQRKIDGTTEEEDNIELNEEGRPVQTSRPSPPLCDCHCC
GLPKRYIIAIMSGLGFCISFGIRCNLGVAIVEMVNNSTVYVDGKPEIQTAQFNWDPETVGLIHGSFFWGY
IMTQIPGGFISNKFAANRVFGAAIFLTSTLNMFIPSAARVHYGCVMCVRILQGLVEGVTYPACHGMWSKW
APPLERSRLATTSFCGSYAGAVVAMPLAGVLVQYIGWSSVFYIYGMFGIIWYMFWLLQAYECPAAHPTIS
NEEKTYIETSIGEGANVVSLSVGLLSAVPHMVMTIVVPIGGQLADYLRSRQILTTTAVRKIMNCGGFGME
ATLLLVVGFSHTKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGA
MTRHKTREEWQNVFLIAALVHYSGVIFYGVFASGEKQEWADPENLSEEKCGIIDQDELAEEIELNHESFA
SPKKKMSYGATSQNCEVQKKEWKGQRGATLDEEELTSYQNEERNFSTIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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