NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS45013.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
45013.1 Public Homo sapiens 13 TPTE2 24 110 108 CCDS HistoryNCBI Gene:93492Re-query CCDS DB by CCDS ID:45013.1Re-query CCDS DB by GeneID:93492See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 45013.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400103.7 ENSP00000382974.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400103.7Link to Ensembl Protein Viewer:ENSP00000382974.2Re-query CCDS DB by Nucleotide ID:ENST00000400103Re-query CCDS DB by Protein ID:ENSP00000382974
Original member Current member NCBI NM_001141968.2 NP_001135440.1 Accepted alive Link to Nucleotide Sequence:NM_001141968.2Link to Protein Sequence:NP_001135440.1Re-query CCDS DB by Nucleotide ID:NM_001141968Re-query CCDS DB by Protein ID:NP_001135440Link to BLAST:NP_001135440.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001135440.1 411 Q6XPS3-5 411 100% 0 0

Chromosomal Locations for CCDS 45013.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 19423062 19423164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19424947 19425017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19426425 19426517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19430468 19430547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19432473 19432578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19436226 19436306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19438092 19438153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19450076 19450164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19450263 19450344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19451165 19451225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19464456 19464520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19465255 19465318 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19465465 19465564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19482488 19482547 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19492850 19492903 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19493448 19493501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 19503224 19503234 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGAATGAAAGTCCACAGACAAACGAATTTAAAGGAACAACCGAGGAGGCACCTGCGAAAGAAAGCCCAC
ACACAAGTGAATTTAAAGGAGCAGCCCTGGTGTCACCTATCAGTAAAAGTATGTTAGAACGACTTTCCAA
GTTTGAAGTTGAAGATGCTGAAAATGTTGCTTCATATGAATGGACACATTTAGTTCGACTTCTACGACTT
ATTATTCTGATAAGAATTTTTCATCTGCTTCATCAAAAAAGACAACTTGAAAAGCTGATGAGAAGGCTGG
TTTCAGAAAACAAAAGGCGATACACAAGGGATGGATTTGACCTAGACCTCACTTACGTTACAGAACGTAT
TATTGCTATGTCATTTCCATCTTCTGGAAGGCAGTCTTTCTATAGAAATCCAATTGAGGAAGTTGTGCGG
TTTCTAGATAAGAAACATCGAAACCACTATCGAGTCTACAATCTATGCAGTGAAAGAGCTTATGATCCTA
AGCACTTCCATAATAGGGTCAGTAGAATCATGATTGATGATCATAATGTCCCCACTCTACATGAGATGGT
GGTTTTCACCAAGGAAGTAAATGAGTGGATGGCTCAAGATCTTGAAAACATCGTAGCGATTCACTGTAAA
GGAGGCAAAGGAAGAACCGGGACTATGGTTTGTGCCCTCCTTATTGCCTCCGAAATATTTTTAACTGCCG
AGGAAAGCCTATATTATTTTGGAGAAAGGCGAACCAATAAAACCCACAGCAATAAATTTCAGGGAGTAGA
AACTCCTTCTCAGAATAGATATGTTGGATATTTTGCACAAGTGAAACATCTCTACAACTGGAATCTCCCT
CCAAGACGGATACTCTTTATAAAAAGATTCATTATTTATTCGATTCGTGGTGATGTATGTGATCTAAAAG
TCCAAGTAGTAATGGAGAAAAAGGTTGTCTTTTCCAGTACTTCATTAGGAAATTGTTCGATATTGCATGA
CATTGAAACAGACAAAATATTAATTAATGTATATGACGGTCCACCTCTGTATGATGATGTGAAAGTGCAG
TTTTTCTCTTCGAATCTTCCTAAATACTATGACAATTGTCCATTTTTCTTCTGGTTCAACACGTCTTTTA
TTCAAAATAACAGGCTTTGTCTACCAAGAAATGAATTGGATAATCCACATAAACAAAAAGCATGGAAAAT
TTATCCACCAGAATTTGCTGTGGAGATACTTTTTGGCGAGAAATGA

Translation (411 aa):
MNESPQTNEFKGTTEEAPAKESPHTSEFKGAALVSPISKSMLERLSKFEVEDAENVASYEWTHLVRLLRL
IILIRIFHLLHQKRQLEKLMRRLVSENKRRYTRDGFDLDLTYVTERIIAMSFPSSGRQSFYRNPIEEVVR
FLDKKHRNHYRVYNLCSERAYDPKHFHNRVSRIMIDDHNVPTLHEMVVFTKEVNEWMAQDLENIVAIHCK
GGKGRTGTMVCALLIASEIFLTAEESLYYFGERRTNKTHSNKFQGVETPSQNRYVGYFAQVKHLYNWNLP
PRRILFIKRFIIYSIRGDVCDLKVQVVMEKKVVFSSTSLGNCSILHDIETDKILINVYDGPPLYDDVKVQ
FFSSNLPKYYDNCPFFFWFNTSFIQNNRLCLPRNELDNPHKQKAWKIYPPEFAVEILFGEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH