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Report for CCDS4564.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4564.1 Public Homo sapiens 6 SLC17A4 24 110 108 CCDS HistoryNCBI Gene:10050Re-query CCDS DB by CCDS ID:4564.1Re-query CCDS DB by GeneID:10050See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4564.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000377905.9 ENSP00000367137.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000377905.9Link to Ensembl Protein Viewer:ENSP00000367137.4Re-query CCDS DB by Nucleotide ID:ENST00000377905Re-query CCDS DB by Protein ID:ENSP00000367137
Original member Current member NCBI NM_005495.3 NP_005486.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005495.3Link to Protein Sequence:NP_005486.1Re-query CCDS DB by Nucleotide ID:NM_005495Re-query CCDS DB by Protein ID:NP_005486Link to BLAST:NP_005486.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005486.1 497 Q9Y2C5-1 497 100% 0 0

Chromosomal Locations for CCDS 4564.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25761963 25762053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25768985 25769190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25770067 25770300 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25770384 25770471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25770926 25771012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25773275 25773393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25773513 25773674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25776595 25776727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25776812 25776959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25777926 25778016 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25779054 25779188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1494 nt):
ATGTCTACCGGACCAGATGTCAAGGCTACAGTGGGGGACATTTCCAGTGATGGCAATTTAAACGTGGCTC
AAGAGGAATGCTCCAGGAAAGGTTTTTGTTCAGTCCGACATGGGCTGGCCCTCATCTTGCAGCTCTGTAA
TTTTTCAATTTACACCCAACAAATGAACTTGAGCATTGCCATCCCAGCTATGGTGAACAACACAGCCCCA
CCTAGCCAGCCCAATGCTTCCACAGAACGGCCCTCCACTGACTCCCAGGGCTACTGGAATGAAACTCTAA
AAGAATTTAAAGCAATGGCCCCTGCATATGACTGGAGTCCTGAAATCCAGGGAATCATCCTCAGCTCCCT
CAACTATGGCTCATTCTTGGCTCCAATCCCCAGTGGCTATGTGGCTGGAATATTTGGAGCCAAGTATGTG
GTTGGTGCTGGCTTGTTTATTTCCTCATTCCTGACCCTCTTCATTCCACTGGCAGCTAATGCGGGAGTGG
CCTTGCTCATTGTCCTCCGGATTGTACAAGGCATAGCCCAGGTTATGGTATTAACTGGTCAGTATTCAAT
TTGGGTCAAATGGGCTCCCCCACTGGAAAGGAGTCAACTCACCACCATTGCTGGATCAGGGTCAATGCTG
GGGTCCTTCATTGTTCTACTTGCTGGTGGTCTCCTCTGCCAGACCATAGGATGGCCTTACGTCTTCTATA
TCTTTGGAGGAATTGGCTGTGCTTGTTGTCCTCTCTGGTTTCCTCTCATTTATGATGATCCTGTGAATCA
TCCCTTTATCAGTGCTGGTGAGAAGAGATACATTGTGTGTTCATTGGCTCAGCAGGACTGTTCACCAGGC
TGGTCTCTTCCCATTAGGGCTATGATCAAATCCTTACCACTCTGGGCCATTTTAGTCTCTTATTTCTGTG
AATACTGGCTTTTTTATACCATTATGGCGTACACACCAACGTACATCAGCTCGGTACTTCAAGCCAACCT
CAGAGATAGTGGGATCCTGTCTGCCTTGCCGTTTGTTGTTGGATGTATCTGCATTATCCTTGGAGGTCTA
CTGGCAGACTTTCTTCTCTCCAGAAAAATCCTCAGACTCATCACCATCAGGAAACTCTTCACTGCCATTG
GGGTTCTCTTCCCATCCGTGATCCTCGTGTCCCTGCCCTGGGTCAGATCCAGCCACAGCATGACCATGAC
CTTCTTGGTGCTGTCTTCTGCCATCAGCAGCTTCTGTGAATCAGGAGCCCTTGTTAACTTCTTGGATATT
GCTCCTCGGTACACTGGCTTTCTCAAAGGACTATTGCAAGTCTTTGCACACATAGCTGGAGCCATCTCTC
CTACTGCTGCTGGATTTTTCATCAGTCAGGATTCAGAGTTTGGTTGGAGAAATGTCTTCTTGCTTTCAGC
TGCTGTTAACATATCGGGCCTGGTTTTCTACCTCATCTTTGGCCGAGCAGATGTGCAGGACTGGGCTAAA
GAGCAGACATTCACCCACCTCTGA

Translation (497 aa):
MSTGPDVKATVGDISSDGNLNVAQEECSRKGFCSVRHGLALILQLCNFSIYTQQMNLSIAIPAMVNNTAP
PSQPNASTERPSTDSQGYWNETLKEFKAMAPAYDWSPEIQGIILSSLNYGSFLAPIPSGYVAGIFGAKYV
VGAGLFISSFLTLFIPLAANAGVALLIVLRIVQGIAQVMVLTGQYSIWVKWAPPLERSQLTTIAGSGSML
GSFIVLLAGGLLCQTIGWPYVFYIFGGIGCACCPLWFPLIYDDPVNHPFISAGEKRYIVCSLAQQDCSPG
WSLPIRAMIKSLPLWAILVSYFCEYWLFYTIMAYTPTYISSVLQANLRDSGILSALPFVVGCICIILGGL
LADFLLSRKILRLITIRKLFTAIGVLFPSVILVSLPWVRSSHSMTMTFLVLSSAISSFCESGALVNFLDI
APRYTGFLKGLLQVFAHIAGAISPTAAGFFISQDSEFGWRNVFLLSAAVNISGLVFYLIFGRADVQDWAK
EQTFTHL


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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