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Report for CCDS4567.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4567.1 Public Homo sapiens 6 SLC17A2 24 110 108 CCDS HistoryNCBI Gene:10246Re-query CCDS DB by CCDS ID:4567.1Re-query CCDS DB by GeneID:10246See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4567.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000360488.7 ENSP00000353677.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000360488.7Link to Ensembl Protein Viewer:ENSP00000353677.3Re-query CCDS DB by Nucleotide ID:ENST00000360488Re-query CCDS DB by Protein ID:ENSP00000353677
Original member Current member NCBI NM_005835.4 NP_005826.1 Accepted alive Link to Nucleotide Sequence:NM_005835.4Link to Protein Sequence:NP_005826.1Re-query CCDS DB by Nucleotide ID:NM_005835Re-query CCDS DB by Protein ID:NP_005826Link to BLAST:NP_005826.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_005826.1 436 O00624-2 436 100% 0 0

Chromosomal Locations for CCDS 4567.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25913295 25913451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25914580 25914670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25915736 25915868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25916685 25916846 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25916969 25917087 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25918487 25918573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25921006 25921093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25921179 25921412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25923695 25923906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25925769 25925796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1311 nt):
ATGGACGGGAAGCCTGCCACCAGGAAAGGTCCAGATTTCTGTTCATTACGCTATGGGCTGGCTCTTATCA
TGCACTTCTCAAACTTCACCATGATAACGCAGCGTGTGAGTCTGAGCATTGCGATCATCGCCATGGTGAA
CACCACTCAGCAGCAAGGTCTATCTAATGCCTCCACTGAGGGGCCTGTTGCAGATGCCTTCAATAACTCC
AGCATATCCATCAAGGAATTTGATACAAAGGCCTCTGTGTATCAATGGAGCCCAGAAACTCAGGGTATCA
TCTTTAGCTCCATCAACTATGGGATAATACTGACTCTGATCCCAAGTGGATATTTAGCAGGGATATTTGG
AGCAAAAAAAATGCTTGGTGCTGGTTTGCTGATCTCTTCCCTTCTCACCCTCTTTACACCACTGGCTGCT
GACTTCGGAGTGATTTTGGTCATCATGGTTCGGACAGTCCAGGGCATGGCCCAGGGAATGGCATGGACAG
GTCAGTTTACTATTTGGGCAAAGTGGGCTCCTCCACTTGAACGAAGCAAGCTCACCACCATTGCAGGATC
AGGGTCAGCATTTGGATCCTTCATCATCCTCTGTGTGGGGGGACTAATCTCACAGGCCTTGAGCTGGCCT
TTTATCTTCTACATCTTTGGTAGCACTGGCTGTGTCTGCTGTCTCCTATGGTTCACAGTGATTTATGATG
ACCCCATGCATCACCCGTGCATAAGTGTTAGGGAAAAGGAGCACATCCTGTCCTCACTGGCTCAACAGCC
CAGTTCTCCTGGACGAGCTGTCCCCATAAAGGCGATGGTCACATGCCTACCACTTTGGGCCATTTTCCTG
GGTTTTTTCAGCCATTTCTGGTTGTGCACCATCATCCTAACATACCTACCAACGTATATCAGTACTCTGC
TCCATGTTAACATCAGAGATAGTGGAGTTCTGTCCTCCCTGCCTTTTATTGCTGCTGCAAGCTGTACAAT
TTTAGGAGGTCAGCTGGCAGATTTCCTTTTGTCCAGGAATCTTCTCAGATTGATCACTGTGCGAAAGCTC
TTTTCATCTCTTGATATGCAAGTTTCCTCATGGGAATCTCAAGGGGATTTGGGCTCATCGCAGGAATCAT
CTCTTCCACTGCCACTGGATTCCTCATCAGTCAGGATTTTGAGTCTGGTTGGAGGAATGTCTTTTTCCTG
TCTGCTGCAGTCAACATGTTTGGCCTGGTCTTTTACCTCACGTTTGGACAAGCAGAACTTCAAGACTGGG
CCAAAGAGAGGACCCTTACCCGCCTCTGAGGACATAAAGTTACAAACTTAA

Translation (436 aa):
MDGKPATRKGPDFCSLRYGLALIMHFSNFTMITQRVSLSIAIIAMVNTTQQQGLSNASTEGPVADAFNNS
SISIKEFDTKASVYQWSPETQGIIFSSINYGIILTLIPSGYLAGIFGAKKMLGAGLLISSLLTLFTPLAA
DFGVILVIMVRTVQGMAQGMAWTGQFTIWAKWAPPLERSKLTTIAGSGSAFGSFIILCVGGLISQALSWP
FIFYIFGSTGCVCCLLWFTVIYDDPMHHPCISVREKEHILSSLAQQPSSPGRAVPIKAMVTCLPLWAIFL
GFFSHFWLCTIILTYLPTYISTLLHVNIRDSGVLSSLPFIAAASCTILGGQLADFLLSRNLLRLITVRKL
FSSLDMQVSSWESQGDLGSSQESSLPLPLDSSSVRILSLVGGMSFSCLLQSTCLAWSFTSRLDKQNFKTG
PKRGPLPASEDIKLQT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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