NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS46435.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46435.1 Public Homo sapiens 2 UPP2 24 110 108 CCDS HistoryNCBI Gene:151531Re-query CCDS DB by CCDS ID:46435.1Re-query CCDS DB by GeneID:151531See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46435.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000605860.5 ENSP00000474090.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000605860.5Link to Ensembl Protein Viewer:ENSP00000474090.1Re-query CCDS DB by Nucleotide ID:ENST00000605860Re-query CCDS DB by Protein ID:ENSP00000474090
Original member Current member NCBI NM_001135098.2 NP_001128570.1 Accepted alive Link to Nucleotide Sequence:NM_001135098.2Link to Protein Sequence:NP_001128570.1Re-query CCDS DB by Nucleotide ID:NM_001135098Re-query CCDS DB by Protein ID:NP_001128570Link to BLAST:NP_001128570.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001128570.1 374 O95045-2 374 100% 0 0

Chromosomal Locations for CCDS 46435.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 157995199 157995259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158015801 158015886 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158102040 158102125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158106099 158106216 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158115101 158115259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158117824 158117938 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158121409 158121618 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158123749 158123895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 158134748 158134890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1125 nt):
ATGCTGGCCCCAGGCTGTGAGTTGGACCCAGACCAAGAAGTGGTGAGGACAAGGCCTGAAGATGTGCCTG
CTTCCCCTTCAACTTCCACCATGATTGTAAGTGTCCTGAGGCCTCCCAGCCATGCTTCCTGTACAGCCTG
TGGAACTGTGACTTTTCACATAGTAGAGAGAATGGCTTCAGTTATACCTGCCTCCAATAGGTCCATGAGA
TCTGACAGGAATACATATGTTGGAAAAAGGTTTGTTCACGTTAAAAATCCTTACTTGGATTTGATGGATG
AAGACATTCTCTATCACTTGGATTTGGGAACAAAAACACACAACCTACCAGCAATGTTTGGAGATGTAAA
GTTTGTCTGTGTCGGTGGGAGCCCCAACAGAATGAAAGCATTTGCACTGTTTATGCACAAGGAGCTCGGG
TTTGAGGAAGCTGAAGAAGACATAAAAGACATCTGTGCTGGGACAGACAGATACTGTATGTACAAAACCG
GGCCTGTGCTCGCCATCAGTCACGGCATGGGCATCCCCTCCATTTCTATTATGCTTCATGAACTCATCAA
ATTACTCCACCATGCACGGTGCTGCGATGTCACCATTATTAGAATCGGTACATCAGGGGGAATAGGGATT
GCACCAGGGACTGTTGTAATAACGGATATAGCTGTAGACTCCTTCTTTAAGCCCCGGTTTGAACAGGTCA
TTTTGGACAACATTGTCACCCGAAGTACTGAACTGGACAAAGAACTGTCTGAAGAACTGTTCAACTGTAG
CAAAGAAATCCCCAACTTCCCAACCCTCGTTGGACATACAATGTGTACCTATGATTTTTATGAAGGCCAA
GGCCGACTAGATGGAGCACTGTGCTCCTTTTCCAGAGAAAAAAAGTTAGACTACTTGAAGAGAGCATTTA
AAGCTGGTGTCAGGAATATTGAAATGGAATCTACAGTGTTTGCAGCTATGTGTGGACTCTGTGGTCTAAA
AGCTGCTGTGGTCTGTGTGACACTTCTCGACAGACTCGACTGTGATCAGATCAACTTGCCTCATGATGTC
CTGGTGGAGTACCAGCAACGGCCTCAGCTCCTAATCTCCAACTTCATCAGACGGCGGCTTGGACTTTGTG
ACTAG

Translation (374 aa):
MLAPGCELDPDQEVVRTRPEDVPASPSTSTMIVSVLRPPSHASCTACGTVTFHIVERMASVIPASNRSMR
SDRNTYVGKRFVHVKNPYLDLMDEDILYHLDLGTKTHNLPAMFGDVKFVCVGGSPNRMKAFALFMHKELG
FEEAEEDIKDICAGTDRYCMYKTGPVLAISHGMGIPSISIMLHELIKLLHHARCCDVTIIRIGTSGGIGI
APGTVVITDIAVDSFFKPRFEQVILDNIVTRSTELDKELSEELFNCSKEIPNFPTLVGHTMCTYDFYEGQ
GRLDGALCSFSREKKLDYLKRAFKAGVRNIEMESTVFAAMCGLCGLKAAVVCVTLLDRLDCDQINLPHDV
LVEYQQRPQLLISNFIRRRLGLCD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH