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Report for CCDS46765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46765.1 Public Homo sapiens 3 SLC6A6 24 110 108 CCDS HistoryNCBI Gene:6533Re-query CCDS DB by CCDS ID:46765.1Re-query CCDS DB by GeneID:6533See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46765.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000621751.4 ENSP00000482560.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000621751.4Link to Ensembl Protein Viewer:ENSP00000482560.1Re-query CCDS DB by Nucleotide ID:ENST00000621751Re-query CCDS DB by Protein ID:ENSP00000482560
Original member Current member NCBI NM_001134368.4 NP_001127840.1 Accepted alive Link to Nucleotide Sequence:NM_001134368.4Link to Protein Sequence:NP_001127840.1Re-query CCDS DB by Nucleotide ID:NM_001134368Re-query CCDS DB by Protein ID:NP_001127840Link to BLAST:NP_001127840.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001127840.1 200 P31641-2 200 100% 0 0

Chromosomal Locations for CCDS 46765.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 14443635 14443863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14445717 14445851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 14447582 14447820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGGCCACCAAGGAGAAGCTGCAGTGTCTGAAAGATTTCCACAAGGACATCCTGAAGCCCTCACCAGGGA
AGAGCCCAGGCACGCGGCCTGAGGACGAGGCTGAGGGAAAACCTCCGCAGAGGGAGAAGTGGTCTAGCAA
GATCGACTTTGTGCTCTCTGTGGCTGGCGGCTTCGTGGGCTTGGGCAACGTCTGGCGCTTCCCGTACCTC
TGCTACAAGAATGGTGGAGGTGCGTTTCTCATACCGTATTTTATTTTCCTGTTTGGGAGCGGCCTGCCTG
TGTTTTTCTTGGAGATCATCATAGGCCAGTACACCTCTGAAGGGGGCATCACCTGCTGGGAAAAGATCTG
CCCCTTGTTCTCTGGTATCGGCTATGCCTCCGTTGTAATTGTGTCCCTCCTGAATGTCTACTACATCGTC
ATCCTGGCCTGGGCCACATACTACCTGTTCCAGTCCTTCCAGAAGGAGCTGCCCTGGGCACACTGCAACC
ACAGCTGGAACACACCTCACTGCATGGAGGACACCATGCGCAAGAACAAGAGTGTCTGGATCACCATCAG
CTCCACCAACTTCACCTCCCCTGTCATCGAGTTCTGGGAGTAA

Translation (200 aa):
MATKEKLQCLKDFHKDILKPSPGKSPGTRPEDEAEGKPPQREKWSSKIDFVLSVAGGFVGLGNVWRFPYL
CYKNGGGAFLIPYFIFLFGSGLPVFFLEIIIGQYTSEGGITCWEKICPLFSGIGYASVVIVSLLNVYYIV
ILAWATYYLFQSFQKELPWAHCNHSWNTPHCMEDTMRKNKSVWITISSTNFTSPVIEFWE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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