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Report for CCDS46940.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46940.1 Public Homo sapiens 3 PLCH1 24 110 108 CCDS HistoryNCBI Gene:23007Re-query CCDS DB by CCDS ID:46940.1Re-query CCDS DB by GeneID:23007See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46940.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000447496.6 ENSP00000402759.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000447496.6Link to Ensembl Protein Viewer:ENSP00000402759.2Re-query CCDS DB by Nucleotide ID:ENST00000447496Re-query CCDS DB by Protein ID:ENSP00000402759
Original member Current member NCBI NM_001130961.2 NP_001124433.1 Accepted alive Link to Nucleotide Sequence:NM_001130961.2Link to Protein Sequence:NP_001124433.1Re-query CCDS DB by Nucleotide ID:NM_001130961Re-query CCDS DB by Protein ID:NP_001124433Link to BLAST:NP_001124433.1
Original member Current member NCBI NM_001349250.2 NP_001336179.1 Accepted alive Link to Nucleotide Sequence:NM_001349250.2Link to Protein Sequence:NP_001336179.1Re-query CCDS DB by Nucleotide ID:NM_001349250Re-query CCDS DB by Protein ID:NP_001336179Link to BLAST:NP_001336179.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001124433.1 1002 Q4KWH8-3 1002 100% 0 0
NP_001336179.1 1002 Q4KWH8-3 1002 100% 0 0

Chromosomal Locations for CCDS 46940.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 155483366 155483376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155485356 155485710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155486147 155486206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155488028 155488107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155488660 155488806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155490784 155490868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155492729 155492853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155494141 155494248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155494338 155494517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155497320 155497417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155500703 155500794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155504555 155504626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155514723 155514884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155523897 155524004 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155549787 155549958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155554076 155554196 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155564915 155565118 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155568231 155568324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155583472 155583642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155586065 155586194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155593941 155594184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155596232 155596378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 155675997 155676039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3009 nt):
ATGGCAGACCTTGAAGTGTATAAAAACTTAAGTCCAGAAAAAGTTGAAAGATGCATGAGTGTGATGCAGT
CC
GGGACACAGATGATCAAGCTGAAACGTGGAACCAAAGGGCTTGTCCGCCTCTTTTACCTGGATGAGCA
C
CGGACACGCCTCCGATGGCGACCCTCTAGGAAGAGTGAGAAGGCAAAAATACTTATTGATTCCATTTAC
AAA
GTGACTGAGGGCCGGCAGTCTGAAATATTCCACAGACAAGCTGAGGGGAACTTCGACCCCAGCTGCT
GC
TTCACCATCTACCATGGCAACCACATGGAGTCCCTGGACCTCATCACCTCCAACCCCGAGGAGGCCCG
C
ACCTGGATCACAGGCCTCAAGTACCTGATGGCTGGCATCAGTGATGAAGACTCCCTTGCCAAAAGGCAG
AGG
ACCCATGACCAATGGGTGAAGCAGACCTTTGAGGAAGCTGATAAGAATGGTGACGGCTTGCTGAATA
TT
GAAGAGATACATCAGCTGATGCATAAACTGAATGTTAATCTGCCCCGAAGAAAAGTCAGACAAATGTT
T
CAGGAAGCCGACACAGATGAGAATCAGGGAACTTTGACATTTGAAGAGTTCTGTGTTTTTTACAAAATG
ATG
TCTTTGAGACGAGACCTTTATTTGTTACTTTTGAGCTACAGTGACAAGAAAGATCACCTAACTGTGG
AA
GAACTGGCTCAGTTTTTGAAGGTGGAGCAAAAGATGAATAATGTGACAACGGACTATTGTCTTGACAT
C
ATAAAGAAGTTTGAAGTTTCAGAAGAAAATAAGGTGAAAAATGTTCTTGGCATAGAAGGCTTCACGAAC
TTC
ATGCGTAGTCCTGCCTGTGACATATTTAACCCATTGCACCATGAAGTGTACCAAGACATGGATCAGC
CC
CTCTGCAACTACTACATTGCTTCCTCTCACAATACATACCTGACTGGAGACCAGCTCCTTTCTCAGTC
C
AAAGTGGATATGTATGCACGGGTGCTGCAAGAGGGCTGTCGCTGTGTGGAAGTTGACTGTTGGGATGGC
CCA
GATGGAGAGCCAGTAGTACATCATGGTTACACTCTCACTTCAAAAATTCTCTTCAGAGATGTTGTGG
AG
ACCATCAACAAGCATGCCTTTGTGAAGAATGAGTTTCCTGTTATATTGTCTATCGAGAATCACTGCAG
T
ATCCAGCAGCAAAGGAAGATTGCTCAGTACCTGAAAGGAATATTCGGAGACAAACTGGACCTGTCATCT
GTT
GATACAGGGGAGTGCAAGCAGCTTCCAAGCCCTCAAAGTTTGAAAGGCAAAATTCTAGTGAAGGGTA
AG
AAGTTGCCTTATCACCTTGGGGATGATGCAGAGGAAGGGGAAGTTTCTGATGAGGACAGTGCAGATGA
A
ATTGAAGACGAGTGCAAATTCAAGCTCCATTATAGTAATGGGACCACTGAGCATCAGGTGGAATCTTTC
ATA
AGGAAAAAACTGGAGTCACTGTTAAAAGAATCTCAAATTCGAGATAAAGAAGATCCTGATAGTTTCA
CA
GTGCGGGCACTACTGAAGGCCACGCATGAAGGCTTAAATGCACACCTGAAGCAGAGTCCAGATGTAAA
G
GAAAGTGGAAAGAAATCACATGGACGATCCCTCATGACCAACTTTGGAAAACATAAGAAAACTACAAAA
TCA
CGGTCTAAATCTTACAGTACTGATGATGAGGAAGACACACAGCAGAGTACTGGCAAGGAGGGTGGCC
AG
CTGTACAGATTGGGTCGCCGAAGGAAAACCATGAAGCTCTGCCGAGAACTCTCTGATTTGGTTGTGTA
C
ACAAACTCCGTGGCCGCTCAGGACATTGTGGATGACGGAACCACAGGAAATGTGTTATCATTCAGTGAA
ACA
AGAGCACATCAGGTTGTTCAGCAAAAATCAGAGCAGTTCATGATTTATAATCAAAAGCAACTCACGA
GG
ATTTACCCCTCTGCCTACCGCATTGATTCCAGTAACTTCAACCCTCTCCCCTACTGGAACGCAGGCTG
C
CAGCTAGTGGCACTGAATTATCAATCTGAAGGACGAATGATGCAGTTAAACCGAGCCAAATTCAAGGCA
AAT
GGCAATTGTGGCTATGTCCTCAAACCCCAGCAAATGTGCAAAGGTACTTTCAACCCTTTCTCTGGTG
AC
CCTCTTCCTGCCAACCCCAAAAAGCAGCTCATCCTGAAAGTTATCAGTGGACAGCAACTCCCCAAACC
T
CCAGACTCCATGTTTGGAGATCGAGGCGAGATCATTGACCCTTTTGTTGAAGTTGAAATTATTGGATTG
CCA
GTAGATTGTTGTAAAGATCAAACCCGTGTGGTAGATGACAATGGATTTAACCCTGTGTGGGAAGAAA
CA
CTGACATTTACAGTACACATGCCAGAAATAGCTTTGGTTCGGTTCCTTGTGTGGGATCACGATCCCAT
T
GGACGAGACTTTGTTGGACAAAGAACTGTGACCTTCAGCAGCTTAGTGCCTGGCTACCGGCATGTCTAT
TTG
GAAGGACTGACAGAAGCATCCATATTTGTACACATAACCATCAATGAAATCTATGGAAAGTGGAGCC
CT
TTAATACTCAACCCCAGTTATACTATATTGCACTTTCTAGGAGCTACAAAGAACAGACAACTCCAGGG
T
CTGAAGGGACTGTTCAATAAGAATCCTAGGCACAGTTCTTCAGAAAACAATTCCCATTATGTACGGAAG
CGA
TCCATTGGAGATAGAATTCTGCGACGCACAGCTAGCGCCCCAGCCAAAGGCAGGAAAAAGAGCAAAA
TG
GGCTTCCAAGAAATGGTGGAGATAAAGGATTCTGTGTCCGAGGCCACAAGAGATCAAGATGGCGTGCT
G
AGGAGGACCACACGCAGTTTGCAAGCACGCCCTGTCTCTATGCCTGTTGACAGAAACCTTCTGGGAGCT
TTG
TCGCTGCCTGTATCTGAAACAGCAAAAGACATTGAAGGAAAAGAAAACTCTCTAGTACAAATCTGA


Translation (1002 aa):
MADLEVYKNLSPEKVERCMSVMQSGTQMIKLKRGTKGLVRLFYLDEHRTRLRWRPSRKSEKAKILIDSIY
K
VTEGRQSEIFHRQAEGNFDPSCCFTIYHGNHMESLDLITSNPEEARTWITGLKYLMAGISDEDSLAKRQ
R
THD
QWVKQTFEEADKNGDGLLNIEEIHQLMHKLNVNLPRRKVRQMFQEADTDENQGTLTFEEFCVFYKM
M
SLRRDLYLLLLSYSDKKDHLTVEELAQFLKVEQK
MNNVTTDYCLDIIKKFEVSEENKVKNVLGIEGFTN
F
MRSPACDIFNPLHHEVYQDMDQPLCNYYIASSHNTYLTGDQLLSQSKVDMYARVLQEGCRCVE
VDCWDG
P
DGEPVVHHGYTLTSKILFRDVVETINKHAFVKN
EFPVILSIENHCSIQQQRKIAQYLKGIFGDKLDLSS
V
DTGECKQLPSPQSLKGKILVK
GKKLPYHLGDDAEEGEVSDEDSADEIEDECKFKLHYSNGTTEHQVESF
I
RKKLESLLKESQIRDKEDPDSFTVRALLKATHEGLNAHLKQ
SPDVKESGKKSHGRSLMTNFGKHKKTTK
S
RSKSYSTDDEEDTQQSTGKEGGQLY
RLGRRRKTMKLCRELSDLVVYTNSVAAQDIVDDGTTGNVLSFSE
T
RAHQVVQQKSEQFMIYNQKQLTRIYPSAYRIDSSNFNPLPYWNAGCQL
VALNYQSEGRMMQLNRAKFKA
N
GNCGYVLKPQQMCK
GTFNPFSGDPLPANPKKQLILKVISGQQLPKPPDSMFGDRGEIIDPFVEVEIIGL
P
VDCCKDQTRVVDDN
GFNPVWEETLTFTVHMPEIALVRFLVWDHDPIGRDFVGQRTVTFSSLVPGYRHVY
L
EGLTEASIFVHITINEIYGK
WSPLILNPSYTILHFLGATKNRQLQGLKGLFNKNPRHSSSENNSHYVRK
R
SIGDRILRRTASAPAKGRKKSKMGFQEMVEIKDSVSEATRDQDGVLRRTTRSLQARPVSMPVDRNLLGA
L
SLPVSETAKDIEGKENSL
VQI



Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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