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Report for CCDS47090.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47090.2 Public Homo sapiens 4 COQ2 24 110 108 CCDS HistoryNCBI Gene:27235Re-query CCDS DB by CCDS ID:47090.2Re-query CCDS DB by GeneID:27235See the combined annotation on chromosome 4 in Sequence Viewer

Public Note for CCDS 47090.1
The coding region has been updated to extend the N-terminus to one that is more supported by the available transcript and publication (PMID:15153069) data, and by conservation in higher primate species.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by CCDS collaboration)

Sequence IDs included in CCDS 47090.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000311469.9 ENSP00000310873.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000311469.9Link to Ensembl Protein Viewer:ENSP00000310873.4Re-query CCDS DB by Nucleotide ID:ENST00000311469Re-query CCDS DB by Protein ID:ENSP00000310873
Original member Current member NCBI NM_015697.9 NP_056512.5 Accepted alive Link to Nucleotide Sequence:NM_015697.9Link to Protein Sequence:NP_056512.5Re-query CCDS DB by Nucleotide ID:NM_015697Re-query CCDS DB by Protein ID:NP_056512Link to BLAST:NP_056512.5

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056512.5 421 Q96H96-4 421 100% 0 0

Chromosomal Locations for CCDS 47090.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83264199 83264363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83267586 83267774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83269860 83269993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83272087 83272172 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83273496 83273617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83278948 83279114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83284512 83284914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGACCCCAATTTCACAAGTAAGGATGAGGAAAGGTTCTGCCCACACCGCCGCCCAGCCTGGCAGACTAG
GATTGCATCCTGCGGGTGCCACTGCGCATGCCTGCCGGGGAATGACGTCAATCCGAGCTCGTCCCGGCCT
CACCAGCGCCATGCTGGGCTCGCGAGCCGCGGGGTTCGCGCGGGGCCTGCGGGCTGTGGCACTGGCGTGG
CTGCCGGGCTGGCGGGGCCGCTCCTTCGCCCTGGCGCGTGCGGCAGGCGCGCCCCACGGTGGTGACTTGC
AGCCCCCCGCCTGTCCCGAGCCGCGCGGGCGCCAGCTCAGTTTGTCCGCGGCGGCGGTGGTGGACTCTGC
GCCCCGCCCCCTGCAGCCGTACTTGCGCCTCATGCGGTTGGACAAGCCCATTGGAACCTGGCTTCTGTAT
TTACCATGTACCTGGAGCATTGGTTTGGCAGCTGAACCAGGTTGTTTTCCAGATTGGTACATGCTCTCCC
TCTTTGGCACTGGAGCTATTCTGATGCGTGGAGCAGGCTGTACTATTAATGACATGTGGGACCAGGACTA
TGATAAAAAGGTTACAAGAACAGCCAATCGTCCAATAGCCGCTGGAGACATTTCAACTTTTCAGTCCTTT
GTTTTTCTTGGGGGACAGCTAACCCTGGCACTGGGTGTTCTTCTGTGTCTAAATTACTACAGTATAGCTC
TGGGAGCAGGATCCTTACTTCTTGTCATCACCTACCCACTAATGAAAAGAATTTCATACTGGCCTCAACT
AGCCTTGGGCTTGACATTTAATTGGGGAGCGTTACTTGGATGGTCTGCTATCAAGGGTTCCTGTGATCCA
TCTGTTTGCCTGCCTCTTTATTTTTCTGGAGTTATGTGGACACTAATATATGATACTATTTATGCCCATC
AGGACAAAAGAGATGATGTTTTGATTGGTCTTAAGTCAACGGCTCTGCGGTTCGGAGAAAATACCAAGCC
GTGGCTCAGCGGCTTCAGTGTTGCAATGCTGGGGGCACTGAGCCTAGTGGGTGTGAACAGTGGACAGACT
GCTCCCTACTACGCTGCCCTGGGTGCTGTAGGAGCCCATCTGACTCACCAGATTTACACTCTAGACATCC
ACAGACCTGAGGATTGTTGGAATAAATTTATCTCCAACCGAACACTGGGACTAATAGTTTTTTTAGGGAT
TGTCCTTGGGAATTTGTGGAAAGAAAAGAAGACAGACAAAACAAAGAAGGGTATAGAGAATAAAATAGAA
AATTAA

Translation (421 aa):
MTPISQVRMRKGSAHTAAQPGRLGLHPAGATAHACRGMTSIRARPGLTSAMLGSRAAGFARGLRAVALAW
LPGWRGRSFALARAAGAPHGGDLQPPACPEPRGRQLSLSAAAVVDSAPRPLQPYLRLMRLDKPIGTWLLY
LPCTWSIGLAAEPGCFPDWYMLSLFGTGAILMRGAGCTINDMWDQDYDKKVTRTANRPIAAGDISTFQSF
VFLGGQLTLALGVLLCLNYYSIALGAGSLLLVITYPLMKRISYWPQLALGLTFNWGALLGWSAIKGSCDP
SVCLPLYFSGVMWTLIYDTIYAHQDKRDDVLIGLKSTALRFGENTKPWLSGFSVAMLGALSLVGVNSGQT
APYYAALGAVGAHLTHQIYTLDIHRPEDCWNKFISNRTLGLIVFLGIVLGNLWKEKKTDKTKKGIENKIE
N


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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