NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS47385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47385.1 Public Homo sapiens 6 SLC17A3 24 110 108 CCDS HistoryNCBI Gene:10786Re-query CCDS DB by CCDS ID:47385.1Re-query CCDS DB by GeneID:10786See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 47385.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000397060.8 ENSP00000380250.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000397060.8Link to Ensembl Protein Viewer:ENSP00000380250.4Re-query CCDS DB by Nucleotide ID:ENST00000397060Re-query CCDS DB by Protein ID:ENSP00000380250
Original member Current member NCBI NM_001098486.2 NP_001091956.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001098486.2Link to Protein Sequence:NP_001091956.1Re-query CCDS DB by Nucleotide ID:NM_001098486Re-query CCDS DB by Protein ID:NP_001091956Link to BLAST:NP_001091956.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001091956.1 498 O00476-2 498 100% 0 0

Chromosomal Locations for CCDS 47385.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 25845382 25845516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25849374 25849464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25849805 25849952 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25850048 25850177 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25850459 25850620 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25850759 25850877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25855144 25855230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25861624 25861711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25861796 25862029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25862233 25862444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 25868297 25868387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1497 nt):
ATGGCCACCAAGACAGAGTTGAGTCCCACAGCAAGGGAGAGCAAGAACGCACAAGATATGCAAGTGGATG
AGACACTGATCCCCAGGAAAGTTCCAAGTTTATGTTCTGCTCGCTATGGAATAGCCCTCGTCTTACATTT
CTGCAATTTCACAACGATAGCACAAAATGTCATCATGAACATCACCATGGTAGCCATGGTCAACAGCACA
AGCCCTCAATCCCAGCTCAATGATTCCTCTGAGGTGCTGCCTGTTGACTCATTTGGTGGCCTAAGTAAAG
CCCCAAAGAGTCTTCCTGCAAAGGCTCCTGTGTATGACTGGTCTCCTCAAATCCAAGGCATCATCTTTGG
TGCTGTTGGCTATGGTGGCATACTGACAATGGCTCCCAGTGGATACCTGGCTGGAAGAGTAGGAACAAAG
CGAGTGGTTGGCATTTCTTTGTTTGCAACTTCATTTCTCACTCTATGCATCCCTCTGGCCACTGACTTTG
GAATAGTCTTGCTCATTGTAACTCGAATAGTCCAGGGCCTAAGCCAGTCCTCAATACTTGGGGGTCAGTT
TGCAATTTGGGAAAAGTGGGGCCCTCCACAAGAACGAAGCAGACTCTGCAGCATTGCTTTATCAGGAATG
TTACTGGGATGCTTTACTGCCATCCTCATAGGTGGCTTCATTAGTGAAACCCTTGGGTGGCCCTTTGTCT
TCTATATCTTTGGAGGTGTTGGCTGTGTCTGCTGCCTTCTCTGGTTTGTTGTGATTTATGATGACCCCGT
TTCCTATCCATGGATAAGCACCTCAGAAAAAGAATACATCATATCCTCCTTGAAACAACAGGTCGGGTCT
TCTAAGCAGCCTCTTCCCATCAAAGCTATGCTCAGATCTCTACCCATTTGGTCCATATGTTTAGGCTGTT
TCAGCCATCAATGGTTAGTTAGCACAATGGTTGTATACATACCAACTTACATCAGCTCTGTGTACCATGT
TAACATCAGAGACAATGGACTTCTATCTGCCCTTCCTTTTATTGTTGCCTGGGTCATAGGCATGGTGGGA
GGCTATCTGGCAGATTTCCTTCTAACCAAAAAGTTTAGACTCATCACTGTGAGGAAAATTGCCACAATTT
TAGGAAGTCTCCCCTCTTCAGCACTCATTGTGTCTCTGCCTTACCTCAATTCCGGCTATATCACAGCAAC
TGCCTTGCTGACGCTCTCTTGCGGATTAAGCACATTGTGTCAGTCAGGGATTTATATCAATGTCTTAGAT
ATTGCTCCAAGGTATTCCAGTTTTCTCATGGGAGCATCAAGAGGATTTTCGAGCATAGCACCTGTCATTG
TACCCACTGTCAGTGGATTTCTTCTTAGTCAGGACCCTGAGTTTGGGTGGAGGAATGTCTTCTTCTTGCT
GTTTGCCGTTAACCTGTTAGGACTACTCTTCTACCTCATATTTGGAGAAGCAGATGTCCAAGAATGGGCT
AAAGAGAGAAAACTCACTCGTTTATGA

Translation (498 aa):
MATKTELSPTARESKNAQDMQVDETLIPRKVPSLCSARYGIALVLHFCNFTTIAQNVIMNITMVAMVNST
SPQSQLNDSSEVLPVDSFGGLSKAPKSLPAKAPVYDWSPQIQGIIFGAVGYGGILTMAPSGYLAGRVGTK
RVVGISLFATSFLTLCIPLATDFGIVLLIVTRIVQGLSQSSILGGQFAIWEKWGPPQERSRLCSIALSGM
LLGCFTAILIGGFISETLGWPFVFYIFGGVGCVCCLLWFVVIYDDPVSYPWISTSEKEYIISSLKQQVGS
SKQPLPIKAMLRSLPIWSICLGCFSHQWLVSTMVVYIPTYISSVYHVNIRDNGLLSALPFIVAWVIGMVG
GYLADFLLTKKFRLITVRKIATILGSLPSSALIVSLPYLNSGYITATALLTLSCGLSTLCQSGIYINVLD
IAPRYSSFLMGASRGFSSIAPVIVPTVSGFLLSQDPEFGWRNVFFLLFAVNLLGLLFYLIFGEADVQEWA
KERKLTRL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH