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Report for CCDS4744.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4744.1 Public Homo sapiens 6 AGPAT1 24 110 108 CCDS HistoryNCBI Gene:10554Re-query CCDS DB by CCDS ID:4744.1Re-query CCDS DB by GeneID:10554See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4744.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000336984.6 ENSP00000337463.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000336984.6Link to Ensembl Protein Viewer:ENSP00000337463.6Re-query CCDS DB by Nucleotide ID:ENST00000336984Re-query CCDS DB by Protein ID:ENSP00000337463
Original member Current member EBI ENST00000375104.6 ENSP00000364245.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000375104.6Link to Ensembl Protein Viewer:ENSP00000364245.2Re-query CCDS DB by Nucleotide ID:ENST00000375104Re-query CCDS DB by Protein ID:ENSP00000364245
Original member Current member EBI ENST00000375107.8 ENSP00000364248.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000375107.8Link to Ensembl Protein Viewer:ENSP00000364248.3Re-query CCDS DB by Nucleotide ID:ENST00000375107Re-query CCDS DB by Protein ID:ENSP00000364248
Original member Current member EBI ENST00000395496.5 ENSP00000378874.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395496.5Link to Ensembl Protein Viewer:ENSP00000378874.1Re-query CCDS DB by Nucleotide ID:ENST00000395496Re-query CCDS DB by Protein ID:ENSP00000378874
Original member Current member EBI ENST00000395497.5 ENSP00000378875.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395497.5Link to Ensembl Protein Viewer:ENSP00000378875.1Re-query CCDS DB by Nucleotide ID:ENST00000395497Re-query CCDS DB by Protein ID:ENSP00000378875
Original member Current member EBI ENST00000395499.5 ENSP00000378877.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000395499.5Link to Ensembl Protein Viewer:ENSP00000378877.1Re-query CCDS DB by Nucleotide ID:ENST00000395499Re-query CCDS DB by Protein ID:ENSP00000378877
Original member Current member NCBI NM_001371438.1 NP_001358367.1 Accepted alive Link to Nucleotide Sequence:NM_001371438.1Link to Protein Sequence:NP_001358367.1Re-query CCDS DB by Nucleotide ID:NM_001371438Re-query CCDS DB by Protein ID:NP_001358367Link to BLAST:NP_001358367.1
Original member Current member NCBI NM_001371439.1 NP_001358368.1 Accepted alive Link to Nucleotide Sequence:NM_001371439.1Link to Protein Sequence:NP_001358368.1Re-query CCDS DB by Nucleotide ID:NM_001371439Re-query CCDS DB by Protein ID:NP_001358368Link to BLAST:NP_001358368.1
Original member Current member NCBI NM_006411.4 NP_006402.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006411.4Link to Protein Sequence:NP_006402.1Re-query CCDS DB by Nucleotide ID:NM_006411Re-query CCDS DB by Protein ID:NP_006402Link to BLAST:NP_006402.1
Original member Current member NCBI NM_032741.5 NP_116130.2 Accepted alive Link to Nucleotide Sequence:NM_032741.5Link to Protein Sequence:NP_116130.2Re-query CCDS DB by Nucleotide ID:NM_032741Re-query CCDS DB by Protein ID:NP_116130Link to BLAST:NP_116130.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001358367.1 283 Q99943 283 100% 0 0
NP_001358368.1 283 Q99943 283 100% 0 0
NP_006402.1 283 Q99943 283 100% 0 0
NP_116130.2 283 Q99943 283 100% 0 0

Chromosomal Locations for CCDS 4744.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 32169276 32169448 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32169966 32170038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32170165 32170260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32170425 32170600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32170937 32171070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 32171297 32171496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (852 nt):
ATGGATTTGTGGCCAGGGGCATGGATGCTGCTGCTGCTGCTCTTCCTGCTGCTGCTCTTCCTGCTGCCCA
CCCTGTGGTTCTGCAGCCCCAGTGCCAAGTACTTCTTCAAGATGGCCTTCTACAATGGCTGGATCCTCTT
CCTGGCTGTGCTCGCCATCCCTGTGTGTGCCGTGCGAGGACGCAACGTCGAGAACATGAAGATCTTGCGT
CTAATGCTGCTCCACATCAAATACCTGTACGGGATCCGAGTGGAGGTGCGAGGGGCTCACCACTTCCCTC
CCTCGCAGCCCTATGTTGTTGTCTCCAACCACCAGAGCTCTCTCGATCTGCTTGGGATGATGGAGGTACT
GCCAGGCCGCTGTGTGCCCATTGCCAAGCGCGAGCTACTGTGGGCTGGCTCTGCCGGGCTGGCCTGCTGG
CTGGCAGGAGTCATCTTCATCGACCGGAAGCGCACGGGGGATGCCATCAGTGTCATGTCTGAGGTCGCCC
AGACCCTGCTCACCCAGGACGTGAGGGTCTGGGTGTTTCCTGAGGGAACGAGAAACCACAATGGCTCCAT
GCTGCCCTTCAAACGTGGCGCCTTCCATCTTGCAGTGCAGGCCCAGGTTCCCATTGTCCCCATAGTCATG
TCCTCCTACCAAGACTTCTACTGCAAGAAGGAGCGTCGCTTCACCTCGGGACAATGTCAGGTGCGGGTGC
TGCCCCCAGTGCCCACGGAAGGGCTGACACCAGATGACGTCCCAGCTCTGGCTGACAGAGTCCGGCACTC
CATGCTCACTGTTTTCCGGGAAATCTCCACTGATGGCCGGGGTGGTGGTGACTATCTGAAGAAGCCTGGG
GGCGGTGGGTGA

Translation (283 aa):
MDLWPGAWMLLLLLFLLLLFLLPTLWFCSPSAKYFFKMAFYNGWILFLAVLAIPVCAVRGRNVENMKILR
LMLLHIKYLYGIRVEVRGAHHFPPSQPYVVVSNHQSSLDLLGMMEVLPGRCVPIAKRELLWAGSAGLACW
LAGVIFIDRKRTGDAISVMSEVAQTLLTQDVRVWVFPEGTRNHNGSMLPFKRGAFHLAVQAQVPIVPIVM
SSYQDFYCKKERRFTSGQCQVRVLPPVPTEGLTPDDVPALADRVRHSMLTVFREISTDGRGGGDYLKKPG
GGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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