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Report for CCDS47715.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
47715.2 Public Homo sapiens 7 AKR1B15 24 110 108 CCDS HistoryNCBI Gene:441282Re-query CCDS DB by CCDS ID:47715.2Re-query CCDS DB by GeneID:441282See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 47715.1
The coding region has been updated to represent an alternative splicing pattern that is more supported by the available transcript data that aligns specifically to this genomic location. There are no human full-length transcripts representing this exon combination, but it is supported by the tiled ESTs BX337599.2, BX350113.2 and BX337598.2 from the same clone, which were used to construct Genoscope accession CR607509.1.

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 47715.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000457545.7 ENSP00000389289.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000457545.7Link to Ensembl Protein Viewer:ENSP00000389289.1Re-query CCDS DB by Nucleotide ID:ENST00000457545Re-query CCDS DB by Protein ID:ENSP00000389289
Original member Current member EBI ENST00000423958.2 ENSP00000397009.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000423958.2Link to Ensembl Protein Viewer:ENSP00000397009.2Re-query CCDS DB by Nucleotide ID:ENST00000423958Re-query CCDS DB by Protein ID:ENSP00000397009
Original member Current member NCBI NM_001080538.3 NP_001074007.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001080538.3Link to Protein Sequence:NP_001074007.2Re-query CCDS DB by Nucleotide ID:NM_001080538Re-query CCDS DB by Protein ID:NP_001074007Link to BLAST:NP_001074007.2
Original member Current member NCBI NM_001367820.1 NP_001354749.1 Accepted alive Link to Nucleotide Sequence:NM_001367820.1Link to Protein Sequence:NP_001354749.1Re-query CCDS DB by Nucleotide ID:NM_001367820Re-query CCDS DB by Protein ID:NP_001354749Link to BLAST:NP_001354749.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074007.2 344 C9JRZ8-2 344 100% 0 0
NP_001354749.1 344 C9JRZ8-2 344 100% 0 0

Chromosomal Locations for CCDS 47715.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 134564620 134564769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134568158 134568325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134569413 134569529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134571604 134571681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134575420 134575542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134575821 134575927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134576349 134576430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134576963 134577046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134577704 134577786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 134579507 134579549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1035 nt):
ATGGTCTTACAAATGGAACCCCAAGTGAACTCAACTAACAACTTCCACCAAGGACCCCTGGACCAACCCG
TTGGCCCTTTGACTGGCCTAAAGAGTTCCCTTCTGAAGGACACTACAAGTGCAGGGCCCCTTCTTCGCCC
CTATCCAGCATCTCTTCTCGGCAAAGTGAAAGAAGCGGTGAAGGTGGCCATTGATGCAGAATATCGCCAC
ATTGACTGTGCCTATTTCTATGAGAATCAACATGAGGTGGGAGAAGCCATCCAAGAGAAGATCCAAGAGA
AGGCTGTGATGCGGGAGGACCTGTTCATCGTCAGCAAGGTGTGGCCCACTTTCTTTGAGAGACCCCTTGT
GAGGAAAGCCTTTGAGAAGACCCTCAAGGACCTGAAGCTGAGCTATCTGGACGTCTATCTTATTCACTGG
CCACAGGGATTCAAGACTGGGGATGACTTTTTCCCCAAAGATGATAAAGGTAATATGATCAGTGGAAAAG
GAACGTTCTTGGATGCCTGGGAGGCCATGGAGGAGCTGGTGGACGAGGGGCTGGTGAAAGCCCTTGGGGT
CTCAAATTTCAACCACTTCCAGATCGAGAGGCTCTTGAACAAACCTGGACTGAAATATAAACCAGTGACT
AACCAGGTTGAGTGTCACCCATACCTCACGCAGGAGAAACTGATCCAGTACTGCCACTCCAAGGGCATCA
CCGTTACGGCCTACAGCCCCCTGGGCTCTCCGGATAGACCTTGGGCCAAACCTGAGGACCCTTCCCTGCT
GGAGGATCCCAAGATTAAGGAGATTGCTGCAAAGCACAAAAAAACCACAGCCCAGGTTCTGATCCGTTTC
CATATCCAGAGGAATGTGACAGTGATCCCCAAGTCTATGACACCAGCACACATTGTTGAGAACATTCAGG
TCTTTGACTTTAAATTGAGTGATGAGGAGATGGCAACCATACTCAGCTTCAACAGAAACTGGAGGGCCTT
TGACTTCAAGGAATTCTCTCATTTGGAGGACTTTCCCTTCGATGCAGAATATTGA

Translation (344 aa):
MVLQMEPQVNSTNNFHQGPLDQPVGPLTGLKSSLLKDTTSAGPLLRPYPASLLGKVKEAVKVAIDAEYRH
IDCAYFYENQHEVGEAIQEKIQEKAVMREDLFIVSKVWPTFFERPLVRKAFEKTLKDLKLSYLDVYLIHW
PQGFKTGDDFFPKDDKGNMISGKGTFLDAWEAMEELVDEGLVKALGVSNFNHFQIERLLNKPGLKYKPVT
NQVECHPYLTQEKLIQYCHSKGITVTAYSPLGSPDRPWAKPEDPSLLEDPKIKEIAAKHKKTTAQVLIRF
HIQRNVTVIPKSMTPAHIVENIQVFDFKLSDEEMATILSFNRNWRAFDFKEFSHLEDFPFDAEY


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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