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Report for CCDS4813.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4813.1 Public Homo sapiens 6 SLC26A8 24 110 108 CCDS HistoryNCBI Gene:116369Re-query CCDS DB by CCDS ID:4813.1Re-query CCDS DB by GeneID:116369See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4813.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355574.6 ENSP00000347778.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000355574.6Link to Ensembl Protein Viewer:ENSP00000347778.2Re-query CCDS DB by Nucleotide ID:ENST00000355574Re-query CCDS DB by Protein ID:ENSP00000347778
Original member Current member EBI ENST00000490799.6 ENSP00000417638.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000490799.6Link to Ensembl Protein Viewer:ENSP00000417638.1Re-query CCDS DB by Nucleotide ID:ENST00000490799Re-query CCDS DB by Protein ID:ENSP00000417638
Original member Current member NCBI NM_001193476.2 NP_001180405.1 Accepted alive Link to Nucleotide Sequence:NM_001193476.2Link to Protein Sequence:NP_001180405.1Re-query CCDS DB by Nucleotide ID:NM_001193476Re-query CCDS DB by Protein ID:NP_001180405Link to BLAST:NP_001180405.1
Original member Current member NCBI NM_052961.4 NP_443193.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052961.4Link to Protein Sequence:NP_443193.1Re-query CCDS DB by Nucleotide ID:NM_052961Re-query CCDS DB by Protein ID:NP_443193Link to BLAST:NP_443193.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180405.1 970 Q96RN1-1 970 100% 0 0
NP_443193.1 970 Q96RN1-1 970 100% 0 0

Chromosomal Locations for CCDS 4813.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 35943900 35944340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35951163 35951347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35951445 35951499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35955152 35955520 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35959460 35959591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35959714 35959806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35960843 35960912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35960993 35961099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35962526 35962621 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35968877 35968954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35975375 35975488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35977204 35977351 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35982121 35982203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35991659 35991808 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35992510 35992674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35997738 35997919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 35999992 36000108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36012233 36012372 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 36019520 36019707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2913 nt):
ATGGCACAACTAGAGAGGAGCGCCATCTCTGGCTTCAGCTCTAAGTCCAGGCGAAACTCATTCGCATATG
ATGTTAAGCGTGAAGTATACAATGAGGAGACCTTTCAACAGGAACACAAAAGGAAGGCCTCCTCTTCTGG
GAACATGAACATCAACATCACCACCTTCAGACACCACGTCCAGTGCCGCTGCTCATGGCACAGGTTCCTA
CGATGCGTGCTTACAATCTTTCCCTTCCTAGAATGGATGTGTATGTATCGATTAAAGGATTGGCTTCTGG
GAGACTTACTTGCTGGTATAAGTGTTGGCCTTGTGCAAGTTCCCCAAGGCCTGACACTTAGTTTGCTGGC
AAGGCAACTGATTCCTCCTCTCAACATCGCTTATGCAGCTTTCTGTTCTTCGGTAATCTATGTAATTTTT
GGATCGTGTCATCAAATGTCCATTGGTTCCTTCTTCCTGGTGAGTGCTCTGCTGATCAACGTTCTGAAAG
TGAGCCCATTCAACAACGGTCAACTGGTCATGGGATCTTTCGTCAAGAATGAGTTTTCGGCCCCCTCCTA
CCTTATGGGCTATAATAAATCCTTGAGTGTGGTGGCAACCACAACTTTTCTGACTGGGATTATTCAGCTA
ATAATGGGCGTATTGGGTTTGGGCTTCATTGCCACTTACCTTCCGGAGTCTGCAATGAGTGCTTACCTGG
CTGCTGTGGCACTTCATATCATGCTGTCCCAGCTGACTTTCATCTTTGGGATTATGATTAGTTTCCATGC
CGGTCCCATCTCCTTCTTCTATGACATAATTAATTACTGTGTAGCTCTCCCAAAAGCGAATTCCACCAGC
ATTCTAGTATTTCTAACTGTTGTTGTTGCTCTGCGAATCAACAAATGTATCAGAATTTCTTTCAATCAGT
ATCCCATTGAGTTTCCCATGGAATTATTTCTGATTATTGGCTTCACTGTGATTGCAAACAAGATAAGCAT
GGCCACAGAAACCAGCCAGACGCTTATTGACATGATTCCTTATAGCTTTCTGCTTCCTGTAACACCAGAT
TTCAGCCTTCTTCCCAAGATAATTTTACAAGCCTTCTCCTTATCTTTGGTGAGCTCCTTTCTGCTCATAT
TTCTGGGCAAGAAGATTGCCAGTCTTCACAATTACAGTGTCAATTCCAACCAGGATTTAATAGCCATCGG
CCTTTGCAATGTCGTCAGTTCATTTTTCAGATCTTGTGTGTTTACTGGTGCTATTGCTAGGACTATTATC
CAGGATAAATCTGGAGGAAGACAACAGTTTGCATCTCTGGTAGGCGCAGGTGTGATGCTGCTCCTGATGG
TGAAGATGGGACACTTTTTCTACACACTGCCAAATGCTGTGCTGGCTGGTATTATTCTGAGCAACGTCAT
TCCCTACCTTGAAACCATTTCTAACCTACCCAGCCTGTGGAGGCAGGACCAATATGACTGTGCTCTTTGG
ATGATGACATTCTCATCTTCAATTTTCCTGGGACTGGACATTGGACTAATTATCTCAGTAGTTTCTGCTT
TCTTCATCACCACTGTTCGTTCACACAGAGCTAAGATTCTTCTCCTGGGTCAAATCCCTAACACCAACAT
TTATAGAAGCATCAATGATTATCGGGAGATCATCACCATTCCTGGGGTGAAAATCTTCCAGTGCTGCAGC
TCAATTACATTTGTAAATGTTTACTACCTAAAGCATAAGCTGTTAAAAGAGGTTGATATGGTAAAGGTGC
CTCTTAAAGAAGAAGAAATTTTCAGCTTGTTTAATTCAAGTGACACCAATCTACAAGGAGGAAAGATTTG
CAGGTGTTTCTGCAACTGTGATGATCTGGAGCCGCTGCCCAGGATTCTTTACACAGAGCGATTTGAAAAT
AAACTGGATCCCGAAGCATCCTCCATTAACCTGATTCACTGCTCACATTTTGAGAGCATGAACACAAGCC
AAACTGCATCCGAAGACCAAGTGCCATACACAGTATCGTCCGTGTCTCAGAAAAATCAAGGGCAACAGTA
TGAGGAGGTGGAGGAAGTTTGGCTTCCTAATAACTCATCAAGAAACAGCTCACCAGGACTGCCTGATGTG
GCGGAAAGCCAGGGGAGGAGATCACTCATCCCTTACTCAGATGCGTCTCTACTGCCCAGTGTCCACACCA
TCATCCTGGATTTCTCCATGGTACACTACGTGGATTCACGGGGGTTAGTCGTATTAAGACAGATATGCAA
TGCCTTTCAAAACGCCAACATTTTGATACTCATTGCAGGGTGTCACTCTTCCATAGTCAGGGCATTTGAG
AGGAATGATTTCTTTGACGCTGGCATCACCAAGACCCAGCTGTTCCTCAGCGTTCACGACGCCGTGCTGT
TTGCCTTGTCAAGGAAGGTCATAGGCTCCTCTGAGTTAAGCATCGATGAATCCGAGACAGTGATACGGGA
AACCTACTCAGAAACAGACAAGAATGACAATTCAAGATATAAAATGAGCAGCAGTTTTCTAGGAAGCCAA
AAAAATGTAAGTCCAGGCTTCATCAAGATCCAACAGCCTGTAGAAGAGGAGTCGGAGTTGGATTTGGAGC
TGGAATCAGAACAAGAGGCTGGGCTGGGTCTGGACCTAGACCTGGATCGGGAGCTGGAGCCTGAAATGGA
GCCCAAGGCTGAGACCGAGACCAAGACCCAGACCGAGATGGAGCCCCAGCCTGAGACTGAGCCTGAGATG
GAGCCCAACCCCAAATCTAGGCCAAGAGCTCACACTTTTCCTCAGCAGCGTTACTGGCCTATGTATCATC
CGTCTATGGCTTCCACCCAGTCTCAGACTCAGACTCGGACATGGTCAGTGGAGAGGAGACGCCATCCTAT
GGATTCATACTCACCAGAGGGCAACAGCAATGAAGATGTCTAG

Translation (970 aa):
MAQLERSAISGFSSKSRRNSFAYDVKREVYNEETFQQEHKRKASSSGNMNINITTFRHHVQCRCSWHRFL
RCVLTIFPFLEWMCMYRLKDWLLGDLLAGISVGLVQVPQGLTLSLLARQLIPPLNIAYAAFCSSVIYVIF
GSCHQMSIGSFFLVSALLINVLKVSPFNNGQLVMGSFVKNEFSAPSYLMGYNKSLSVVATTTFLTGIIQL
IMGVLGLGFIATYLPESAMSAYLAAVALHIMLSQLTFIFGIMISFHAGPISFFYDIINYCVALPKANSTS
ILVFLTVVVALRINKCIRISFNQYPIEFPMELFLIIGFTVIANKISMATETSQTLIDMIPYSFLLPVTPD
FSLLPKIILQAFSLSLVSSFLLIFLGKKIASLHNYSVNSNQDLIAIGLCNVVSSFFRSCVFTGAIARTII
QDKSGGRQQFASLVGAGVMLLLMVKMGHFFYTLPNAVLAGIILSNVIPYLETISNLPSLWRQDQYDCALW
MMTFSSSIFLGLDIGLIISVVSAFFITTVRSHRAKILLLGQIPNTNIYRSINDYREIITIPGVKIFQCCS
SITFVNVYYLKHKLLKEVDMVKVPLKEEEIFSLFNSSDTNLQGGKICRCFCNCDDLEPLPRILYTERFEN
KLDPEASSINLIHCSHFESMNTSQTASEDQVPYTVSSVSQKNQGQQYEEVEEVWLPNNSSRNSSPGLPDV
AESQGRRSLIPYSDASLLPSVHTIILDFSMVHYVDSRGLVVLRQICNAFQNANILILIAGCHSSIVRAFE
RNDFFDAGITKTQLFLSVHDAVLFALSRKVIGSSELSIDESETVIRETYSETDKNDNSRYKMSSSFLGSQ
KNVSPGFIKIQQPVEEESELDLELESEQEAGLGLDLDLDRELEPEMEPKAETETKTQTEMEPQPETEPEM
EPNPKSRPRAHTFPQQRYWPMYHPSMASTQSQTQTRTWSVERRRHPMDSYSPEGNSNEDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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