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Report for CCDS48295.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48295.1 Public Mus musculus 1 Acsl3 23 108 98 CCDS HistoryNCBI Gene:74205Re-query CCDS DB by CCDS ID:48295.1Re-query CCDS DB by GeneID:74205See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48295.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134566.7 ENSMUSP00000117952.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134566.7Link to Ensembl Protein Viewer:ENSMUSP00000117952.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134566Re-query CCDS DB by Protein ID:ENSMUSP00000117952
Original member NCBI NM_001136222.1 NP_001129694.1 Updated not alive Link to Nucleotide Sequence:NM_001136222.1Link to Protein Sequence:NP_001129694.1Re-query CCDS DB by Nucleotide ID:NM_001136222Re-query CCDS DB by Protein ID:NP_001129694
Current member NCBI NM_001136222.2 NP_001129694.1 Accepted alive Link to Nucleotide Sequence:NM_001136222.2Link to Protein Sequence:NP_001129694.1Re-query CCDS DB by Nucleotide ID:NM_001136222Re-query CCDS DB by Protein ID:NP_001129694Link to BLAST:NP_001129694.1

Chromosomal Locations for CCDS 48295.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 78688315 78688414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78690269 78690378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78692082 78692220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78694196 78694346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78696081 78696204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78696429 78696500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78696890 78697029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78698996 78699168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78699756 78699830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78701269 78701460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78703486 78703600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78705234 78705391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 78706258 78706415 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGTTGGGCCAGAAACCAAAGGCCAACATCGCCATCTTCTGTGAGACCAGGGCTGAGTGGATGATCGCTG
CACAGGCGTGTTTTATGTATAACTTCCAGCTTGTTACACTGTATGCTACTCTGGGAGGTCCAGCCATTGT
TCATGGACTGAATGAGACAGAGGTGACCAACATCATTACTAGCAAAGAACTCTTGCAAACAAAGCTGAAG
GATATAGTCTCTTTGGTCCCACGTCTGCGGCATATCATTACTGTTGATGGGAAGCCTCCAACCTGGTCTG
AGTTCCCCAAAGGTGTCATTGTACACACCATGGCTGCAGTGCAGGCTCTAGGAGTGAAGGCCAACGTGGA
AAAGAAAGCTCACAGCAAACCACTGCCCTCAGATATTGCAGTAATCATGTACACAAGTGGGTCCACAGGA
ATTCCAAAGGGAGTCATGATCTCACACAGCAACATCATTGCTTCTATAACGGGGATGGCGAGAAGGATTC
CAAGACTGGGAGAGGAAGATGTGTATATTGGCTACTTGCCCCTGGCACATGTTCTAGAATTAAGTGCTGA
GCTTGTGTGTCTTTCTCATGGATGCCGAATCGGCTACTCTTCACCACAGACATTAGCAGATCAGTCTTCA
AAAATAAAAAAAGGAAGCAAAGGAGACACATCCGTGCTGAAGCCAACACTGATGGCAGCTGTTCCGGAAA
TCATGGATCGGATCTACAAAAATGTCATGAATAAAGTGAATGAAATGAGTGCTTTTCAACGAAACTTGTT
TATTTTGGCATATAATTATAAGATGGAACAGATTTCAAAAGGGTGTAGTACTCCACTGTGTGACCGCTTT
GTTTTCCGGAATGTCCGAAGGCTGCTGGGTGGAAATATTCGCCTTTTACTGTGTGGTGGTGCTCCGCTTT
CTGCAACAACGCAGCGATTCATGAATATCTGTTTCTGCTGTCCCGTTGGTCAGGGGTATGGACTCACAGA
ATCTACTGGGGCTGGAACAATTACAGAAGTGTGGGACTACAATACCGGCAGAGTGGGAGCACCATTAGTT
TGCTGTGAAATCAAATTAAAGAACTGGGAGGAAGGTGGCTATTTTAATACTGACAAACCACATCCCAGAG
GTGAAATTCTTATTGGTGGCCAAAATGTGACAATGGGGTACTACAAAAATGAAGCAAAAACAAAGACAGA
TTTCTTTGAAGATGAAAATGGACAGCGGTGGCTGTGCACTGGAGATATTGGAGAGTTTGACCCTGACGGC
TGTCTGAAGATCATTGACCGTAAAAAGGACCTTGTGAAACTACAGGCAGGAGAGTACGTTTCTCTCGGGA
AAGTAGAGGCAGCTTTGAAGAACCTCCCACTGATAGATAACATTTGTGCGTATGCAAACAGCTACCATTC
TTACGTAATTGGGTTTGTTGTGCCAAATCAAAAGGAACTTACAGAGCTAGCTAGAACAAAAGGATTTAAA
GGAACTTGGGAAGAGCTGTGTAACAGCAGCGAGATGGAAAATGAGGTCCTTAAAGTGCTTTCTGAAGCTG
CTATTTCAGCAAGTCTGGAAAAGTTTGAAATTCCACTAAAAATACGTTTGAGCCCTGACCCATGGACTCC
CGAAACTGGTCTGGTGACAGATGCCTTCAAGTTGAAACGTAAAGAGCTTAAAACACACTACCAGGCAGAC
ATTGAGCGGATGTATGGAAGAAAATAA

Translation (568 aa):
MLGQKPKANIAIFCETRAEWMIAAQACFMYNFQLVTLYATLGGPAIVHGLNETEVTNIITSKELLQTKLK
DIVSLVPRLRHIITVDGKPPTWSEFPKGVIVHTMAAVQALGVKANVEKKAHSKPLPSDIAVIMYTSGSTG
IPKGVMISHSNIIASITGMARRIPRLGEEDVYIGYLPLAHVLELSAELVCLSHGCRIGYSSPQTLADQSS
KIKKGSKGDTSVLKPTLMAAVPEIMDRIYKNVMNKVNEMSAFQRNLFILAYNYKMEQISKGCSTPLCDRF
VFRNVRRLLGGNIRLLLCGGAPLSATTQRFMNICFCCPVGQGYGLTESTGAGTITEVWDYNTGRVGAPLV
CCEIKLKNWEEGGYFNTDKPHPRGEILIGGQNVTMGYYKNEAKTKTDFFEDENGQRWLCTGDIGEFDPDG
CLKIIDRKKDLVKLQAGEYVSLGKVEAALKNLPLIDNICAYANSYHSYVIGFVVPNQKELTELARTKGFK
GTWEELCNSSEMENEVLKVLSEAAISASLEKFEIPLKIRLSPDPWTPETGLVTDAFKLKRKELKTHYQAD
IERMYGRK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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