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Report for CCDS48309.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48309.1 Under review, update Mus musculus 1 Neu2 23 108 98 CCDS HistoryNCBI Gene:23956Re-query CCDS DB by CCDS ID:48309.1Re-query CCDS DB by GeneID:23956See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 48309.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000164128.1 ENSMUSP00000127913.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164128.1Link to Ensembl Protein Viewer:ENSMUSP00000127913.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164128Re-query CCDS DB by Protein ID:ENSMUSP00000127913
Original member NCBI NM_001160165.1 NP_001153637.1 Updated not alive Link to Nucleotide Sequence:NM_001160165.1Link to Protein Sequence:NP_001153637.1Re-query CCDS DB by Nucleotide ID:NM_001160165Re-query CCDS DB by Protein ID:NP_001153637
Current member NCBI NM_001160165.2 NP_001153637.2 Pending alive Link to Nucleotide Sequence:NM_001160165.2Link to Protein Sequence:NP_001153637.2Re-query CCDS DB by Nucleotide ID:NM_001160165Re-query CCDS DB by Protein ID:NP_001153637Link to BLAST:NP_001153637.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153637.2 379 Q9JMH3 379 100% 0 0

Chromosomal Locations for CCDS 48309.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 87584243 87584249 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87594878 87595089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 87596538 87597476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1158 nt):
ATGGAAGATCTCAGGCCCATGGCGACCTGCCCTGTCCTGCAGAAGGAGACACTGTTCCGCACAGGCGTCC
ATGCTTACAGAATCCCTGCTCTGCTCTACCTGAAGAAGCAGAAGACCCTGCTGGCCTTTGCGGAAAAGCG
AGCCAGCAAGACGGATGAGCACGCAGAGTTGATTGTCCTGAGAAGAGGAAGCTACAACGAAGCCACCAAC
CGTGTCAAGTGGCAGCCTGAGGAAGTGGTGACCCAAGCCCAGCTGGAAGGCCACCGCTCCATGAATCCAT
GTCCCTTGTATGACAAGCAAACAAAGACCCTCTTCCTTTTCTTCATCGCTGTCCCTGGGCGTGTATCAGA
ACATCATCAGCTCCACACTAAGGTTAATGTCACACGGCTGTGCTGTGTCAGCAGCACTGACCATGGGAGG
ACCTGGAGCCCCATCCAGGACCTCACAGAGACCACCATTGGCAGCACTCATCAGGAATGGGCCACATTTG
CTGTGGGTCCTGGGCATTGTCTGCAGCTGCGGAACCCAGCTGGGAGCCTGCTGGTACCTGCTTATGCCTA
CCGGAAACTGCACCCTGCTCAGAAGCCTACCCCCTTTGCCTTCTGCTTCATCAGCCTTGACCATGGGCAC
ACATGGAAACTAGGCAACTTTGTGGCTGAAAACTCACTGGAGTGCCAGGTGGCTGAGGTTGGCACTGGAG
CTCAGAGGATGGTATATCTCAATGCTAGGAGCTTCCTGGGAGCCAGGGTCCAGGCACAAAGTCCTAATGA
TGGTCTGGATTTCCAGGACAACCGGGTAGTGAGTAAGCTTGTAGAGCCCCCCCACGGGTGTCATGGAAGT
GTGGTTGCCTTCCACAACCCCATCTCTAAGCCACATGCCTTAGACACATGGCTTCTTTATACACACCCTA
CAGACTCCAGGAATAGAACCAACCTGGGTGTGTACCTAAACCAGATGCCACTAGATCCCACAGCCTGGTC
AGAGCCCACCCTGCTGGCCATGGGCATCTGTGCCTACTCAGACTTACAGAACATGGGGCAAGGCCCTGAT
GGCTCCCCACAGTTTGGGTGTCTGTATGAATCAGGTAACTATGAAGAGATCATTTTCCTCATATTCACCC
TGAAGCAAGCTTTCCCCACTGTATTTGATGCCCAGTGA

Translation (385 aa):
MEDLRPMATCPVLQKETLFRTGVHAYRIPALLYLKKQKTLLAFAEKRASKTDEHAELIVLRRGSYNEATN
RVKWQPEEVVTQAQLEGHRSMNPCPLYDKQTKTLFLFFIAVPGRVSEHHQLHTKVNVTRLCCVSSTDHGR
TWSPIQDLTETTIGSTHQEWATFAVGPGHCLQLRNPAGSLLVPAYAYRKLHPAQKPTPFAFCFISLDHGH
TWKLGNFVAENSLECQVAEVGTGAQRMVYLNARSFLGARVQAQSPNDGLDFQDNRVVSKLVEPPHGCHGS
VVAFHNPISKPHALDTWLLYTHPTDSRNRTNLGVYLNQMPLDPTAWSEPTLLAMGICAYSDLQNMGQGPD
GSPQFGCLYESGNYEEIIFLIFTLKQAFPTVFDAQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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