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Report for CCDS48360.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
48360.1 Public Mus musculus 1 Pik3c2b 23 108 98 CCDS HistoryNCBI Gene:240752Re-query CCDS DB by CCDS ID:48360.1Re-query CCDS DB by GeneID:240752See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 48360.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077730.6 ENSMUSP00000076911.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077730.6Link to Ensembl Protein Viewer:ENSMUSP00000076911.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077730Re-query CCDS DB by Protein ID:ENSMUSP00000076911
Original member Current member NCBI NM_001099276.2 NP_001092746.2 Accepted alive Link to Nucleotide Sequence:NM_001099276.2Link to Protein Sequence:NP_001092746.2Re-query CCDS DB by Nucleotide ID:NM_001099276Re-query CCDS DB by Protein ID:NP_001092746Link to BLAST:NP_001092746.2

Chromosomal Locations for CCDS 48360.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 1 (NC_000067.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 133066300 133067229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133070318 133070418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133071174 133071328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133071602 133071722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133074511 133074622 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133074779 133074858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133075811 133075874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133077326 133077472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133078219 133078252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133079644 133079839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133080961 133081083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133084818 133084985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133085501 133085612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133086937 133087079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133088188 133088376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133089966 133090059 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133090171 133090265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133090681 133090861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133091561 133091668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133092272 133092364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133093656 133093785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133094698 133094834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133098631 133098800 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133099153 133099309 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133099605 133099714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133100725 133100926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133101330 133101454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133102280 133102397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133103353 133103434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133103801 133103907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133104987 133105115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 133105973 133106158 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4899 nt):
ATGTCTTCCACTCAGGGCAATGGGGAGCACTGGAAGTCCCTGGAGTCGGTGGGCATCAGCCGCAAAGAGC
TGGCTATGGCCGAAGCCCTGCAGATGGAGTATGACGCTCTTTCCCGGCTCCGACATCACAAGGAGGAGAG
CAGGGCCAAGCAGAACACAGAACCCTCTCTTATCAGCTGGGATGAGCCAGCCTTGGACTTCTACAGCAAG
CCAGCAGGCAGGCGGACCGACCTCAAGCTCTTGCGTGGTCTTTCTGGCTCTGATCCCACCCTAAATTACA
ACTCCATCTCCCCACCAGAGGGGCTCCCCAACTCTACCTCCCAGGATCCACAGCCTGGCCCAGACCCCTG
GCCCAAGGGCTCCCTGTCTGGAGACTATCTCTATATTTTTGATGGCTCAGAGGGGAGATGCTCTTTGTCT
CCAGGATCAGGTGACACAGATGGCTCTTGCAAGAAACTATCCCCACCTCCTCTCCCTCCTCGTGTCTCTA
TCTGGGATGCCCCTCCCTTGCCTCCTAGAAAAGGATCACCCTCACCCTCCAAGATCTCTCAGCCTAATGA
CATCAACAGTTTCTCTTCGGCAGAACAGCCACCTGACAAACTGCTAGTGGCCCAGGACCCAGAAGAGGGA
GAGCTGCCTGATGGCAGGGGACAGGGACACACGCTGGGGTCTGTGGACTACGATGGCATCAATGATGCAA
TTACCAGGCTCAACTTGAAGTCCACCTACGACTCAGAGATATCGTCTGATGCTACCAGGGGCTGGAAGGA
GGGCCGAGGGCCCCTGGACTTCAACAAGGACACCTCTGGGAAACCTGTGGCCCGGAGCAAGACGATGCCC
CCTCAGGTGCCCCCTCGAACCTATACTTCTCGATATGCCAACCGAAAAAATGCAACACCTGGCAATAACC
GACGGATTTCTGCTGCTCCGGTGGGCTCTCGGCCCCACACTGTTGCCAATGGCCACGAATTGTTTGAGGT
CTCAGAGGAGAGAGATGAGGAAGTTGCTGCGTTCTGCCACATGCTGGATATCCTTCGAACGGGCTCTGAT
ATCCAGGACTATTCCCTAACTGGGTGTGTCTGGAGCACTGTCACCCCAAGTCCAGAACACCTTGGGGATG
AGGTCAACCTGAAGGTGACAGTGTTGTGTGACAGTCTCCGGGAGCCACTCACCTTTACCTGCAACTGTTC
CTCCACCGTGGACCTGCTCATCCACCAGACCCTCTGCTACACTCACGATGAGCTGAGGGAAGTGGACGTG
GGCGACTTTGTGCTGAAGCCCTGTGGGCTGGAGGAGTTCTTGCAAAATAAGCACGCCCTGGGAAGCCATG
AGTATATCCAATATTGCCGCAAGTTTGATATCAGCATCCGGCTACAGCTGATGGAGCAGAAGGCTATCCG
GAGCGACCTGGCCCGGACGGTGAATGACGACCAGAGCCCTTCCACCTTGAACTACCTCATCCATCTCCAA
GAGAGGCCAGTCAAGCAGACCATCAGCAGGCAGGCCTTGAGTCTTCTGTTTGACACTTACCACAATGAGG
TGGACGCCTTCCTGCTGGCTGATGGGGATTTCCCACTGAAGGCTGACAGGGTGGTCCAGTCTGTCAAGGC
CATTTGCAATGCTCTGGCTGCTGTGGAGACTCCCGAGATCACGAGCGCTCTCAACCAGCTGCCTCCCTGC
CCCTCGCGCATGCAGCCAAAAATCCAGAAGGATCCCAGCGTGTTGAGTGTGAGGGAAAACCGAGAGAAGG
TGGTAGAAGCCTTGACAGCGGCCATCTTGGACTTGGTGGAGCTGTACTGCAGCACATTCAATGCAGACTT
CCAGACGGCGGTGCCTGGGAGCCGAAAGCATGATTTGGTTCAAGAGGCCTGCCACTTCCCTGGGGCCCTG
GCCTTCACTGTCTATGGCACTCACCGTATTCCCATCATCTGGGCTACCAGCTATGAAGATTTCTACCTCT
CCTGCTCCCTCAGCCACGGTGGCAAGGAACTTTGCAGCCCCCTGCAGACCCGGCGGGCTCACTTCTCCAA
GTACCTGTTCCACCTCATCATCTGGGACCAGCAGATCTGCTTTCCAGTGCAGGTGAACAGGCTACCTCGG
GAGACTCTGCTGTGTGCCACACTCTATGCCCTGCCCGTTCCCCCTCCTGGGGGTTCCTCTGAAGCGAATA
AGCAGAAGCGGGTGCCTGAAGCTCTGGGTTGGGTCACTACCCCTCTCTTCAACTTCAGGCAAGTCTTGAC
CTGTGGTCGAAAGCTCCTGGGCTTGTGGCCAGCGACACAGGAAAACTCCGGTGCCCGCTGGAGTGCGCCT
AATTTCCACCAGCCAGACAGTGTTATCCTGCAGATTGACTTCCCCAGCTCGGCCTTTGACATCAAGTTCA
CCAGCCCCCCTGGAGACAAGTTCAGCCCCCGCTATGAGTTTGGCAGTCTCCGGGAGGAGGACCAGCGCAA
ACTTAAAGACATTACGCAGAAGGAGTCCCTATACTGGCTCACGGATGCTGACAAGAAGCAGCTGTGGGAG
AAACGCTATTACTGCCACACTGAGGTGAGCTCACTCCCCCTGGTTCTCGCCAGTGCACCCAGCTGGGAGT
GGGCTTGCCTGCCGGACATCTATGCTCTCCTGCAACAGTGGACTCACATGAACCACCAAGATGCCCTGGG
ACTCCTGCATGCCACCTTCCCGGACCAGGAGGTGCGGCGGATGGCCGTGCAGTGGATCGGCTCCCTCTCA
GATGCGGAGCTGCTGGACTACCTGCCCCAGCTAGTCCAGGCCCTGAAGTATGAGTGCTACCTGGATAGCC
CCTTGGTGCGCTTTCTCCTGAAACGAGCCATCTCTGACCTGCGAGTGACCCACTACTTCTTCTGGTTACT
GAAGGACAGCCTCAAGGACTCTCAGTTCAGTATCCGCTACCAATACCTGCTAGCAGCCCTGCTGTGCTGC
TGTGGCAAGGGACTGAGGGAGGAGTTTAACCGCCAGTGCTGGCTTGTCAACACCCTGGCCAAACTGGCCC
AGCAGGTCCGAGAGGCCACCCCATCCGCCCGCCAGGGCATCCTTCGTGTGGGCTTGGAGGAGGTGAAGCA
GTTCTTTGCCCTCAATGGTTCGTGCCGTCTGCCGCTCAGTCCCAGTCTCCTGGTGAAGGGCATCGTGCCC
AGGGACTGCTCCTACTTCAATTCCAACGCAGTGCCCCTGAAGCTTGCCTTCCAAAATGTGGATCCGCTGG
GCGAGAACATCAGAGTCATCTTTAAGTGTGGGGATGATCTTCGTCAGGACATGCTCACCCTGCAGATGAT
TCGCATCATGAGCAAGATCTGGGTACAGGAGGGGCTGGACATGCGCATGGTCATCTTCCGCTGCTTCTCC
ACTGGCCGAGGAAAAGGGATGGTAGAGATGATACCCAATGCAGAGACACTGCGCAAGATCCAGGTGGAAC
ATGGGGTGACTGGCTCCTTCAAGGACCGTCCCCTGGCCGACTGGCTACAAAAACACAACCCTGGGGAGGA
TGAATATGAAAAGGCTGTGGAGAACTTCATCTACTCTTGTGCTGGCTGCTGTGTAGCTACATACATCTTG
GGCATCTGTGACAGACACAATGACAACATCATGCTAAAGACCACGGGCCACATGTTCCATATAGATTTCG
GCCGCTTCCTGGGTCACGCACAGATGTTTGGTAACATCAAGAGGGACCGTGCCCCGTTTGTCTTCACCTC
AGACATGGCGTATGTCATCAATGGGGGTGACAAGCCTTCCAGCCGCTTCCATGATTTTGTTGACCTTTGC
TGCCAAGCCTACAACCTCATTCGCAAGCACACCCACCTCTTCCTCAACCTTCTGGGCCTGATGCTGTCCT
GTGGAATCCCCGAGCTCTCAGACCTGGAGGACCTCAAGTATGTGTATGATGCCCTGAGACCTCAGGACAC
AGAGGCCAATGCCACCACCTACTTCACAAGGTTGATTGAGTCCAGCCTGGGCAGCGTAGCCACGAAACTC
AACTTTTTCATCCATAACCTGGCTCAGATGAAGTTCACAGGCTCAGATGACCGGCTGACCCTCTCCTTCG
CTCCCCGGACACACACTCTCAAGAGCTCTGGCCGCATCCGAGATGTCTTCCTCTGCCGACATGAGAAGAT
CTTCCACCCCAGCAAGGGCTATGTATATGTGGTGAAGGTGATGCGAGAGAATGCTCACGAGGCGACATAC
ATCCAGAGGACATTCGAGGAGTTCCAGGAACTGCACAATAAGCTGCGCCTGCTCTTCCCTTCTTCCTTCC
TGCCCAGCTTCCCTAGCCGGTTTGTGATTGGCCGCTCCCGGGGAGAGGCAGTGGCTGAGAGGAGGAAGGA
GGAGTTAAATGGCTACATCTGGCACCTGATTCATGCAGCCCCTGAGGTGGCTGAGTGTGATCTGGTGTAT
ACTTTCTTCCACCCCCTGCCCCGAGATGAGAAGGCTTCAGGCCCCAGCCCAGCTCCGAAGTCCTCAGATG
GGACGTGGGCCCGGCCGGTTGGGAAGGTCGGTGGGGAGGTGAAGCTGTCTATCTCCTACAAAAACAACAA
ACTCTTCATCATGGTGATGCATATTCGGGGCTTGCAACCGCTCCAGGATGGCAATGACCCTGACCCCTAT
GTAAAGATTTACCTCCTTCCTGACCCTCAGAAAACCACAAAGAGGAAAACCAAGGTGGCCCGGAAAACCT
GCAACCCTACCTACAATGAGATGCTGGTATATGATGGGATCCCCAAGGGAGACCTGCAGCAGCGGGAGCT
ACAGTTGAGTGTGCTGAGTGAGCAAGGATTTTGGGAGAATCTGCTTCTCGGGGAGGTGCACATCCGCCTT
CGGGAGCTGGACCTGGCCCAGGAGAAGACCGGCTGGTTTGGACTGGGTTCTCGAGGTCATGGAACCTAA

Translation (1632 aa):
MSSTQGNGEHWKSLESVGISRKELAMAEALQMEYDALSRLRHHKEESRAKQNTEPSLISWDEPALDFYSK
PAGRRTDLKLLRGLSGSDPTLNYNSISPPEGLPNSTSQDPQPGPDPWPKGSLSGDYLYIFDGSEGRCSLS
PGSGDTDGSCKKLSPPPLPPRVSIWDAPPLPPRKGSPSPSKISQPNDINSFSSAEQPPDKLLVAQDPEEG
ELPDGRGQGHTLGSVDYDGINDAITRLNLKSTYDSEISSDATRGWKEGRGPLDFNKDTSGKPVARSKTMP
PQVPPRTYTSRYANRKNATPGNNRRISAAPVGSRPHTVANGHELFEVSEERDEEVAAFCHMLDILRTGSD
IQDYSLTGCVWSTVTPSPEHLGDEVNLKVTVLCDSLREPLTFTCNCSSTVDLLIHQTLCYTHDELREVDV
GDFVLKPCGLEEFLQNKHALGSHEYIQYCRKFDISIRLQLMEQKAIRSDLARTVNDDQSPSTLNYLIHLQ
ERPVKQTISRQALSLLFDTYHNEVDAFLLADGDFPLKADRVVQSVKAICNALAAVETPEITSALNQLPPC
PSRMQPKIQKDPSVLSVRENREKVVEALTAAILDLVELYCSTFNADFQTAVPGSRKHDLVQEACHFPGAL
AFTVYGTHRIPIIWATSYEDFYLSCSLSHGGKELCSPLQTRRAHFSKYLFHLIIWDQQICFPVQVNRLPR
ETLLCATLYALPVPPPGGSSEANKQKRVPEALGWVTTPLFNFRQVLTCGRKLLGLWPATQENSGARWSAP
NFHQPDSVILQIDFPSSAFDIKFTSPPGDKFSPRYEFGSLREEDQRKLKDITQKESLYWLTDADKKQLWE
KRYYCHTEVSSLPLVLASAPSWEWACLPDIYALLQQWTHMNHQDALGLLHATFPDQEVRRMAVQWIGSLS
DAELLDYLPQLVQALKYECYLDSPLVRFLLKRAISDLRVTHYFFWLLKDSLKDSQFSIRYQYLLAALLCC
CGKGLREEFNRQCWLVNTLAKLAQQVREATPSARQGILRVGLEEVKQFFALNGSCRLPLSPSLLVKGIVP
RDCSYFNSNAVPLKLAFQNVDPLGENIRVIFKCGDDLRQDMLTLQMIRIMSKIWVQEGLDMRMVIFRCFS
TGRGKGMVEMIPNAETLRKIQVEHGVTGSFKDRPLADWLQKHNPGEDEYEKAVENFIYSCAGCCVATYIL
GICDRHNDNIMLKTTGHMFHIDFGRFLGHAQMFGNIKRDRAPFVFTSDMAYVINGGDKPSSRFHDFVDLC
CQAYNLIRKHTHLFLNLLGLMLSCGIPELSDLEDLKYVYDALRPQDTEANATTYFTRLIESSLGSVATKL
NFFIHNLAQMKFTGSDDRLTLSFAPRTHTLKSSGRIRDVFLCRHEKIFHPSKGYVYVVKVMRENAHEATY
IQRTFEEFQELHNKLRLLFPSSFLPSFPSRFVIGRSRGEAVAERRKEELNGYIWHLIHAAPEVAECDLVY
TFFHPLPRDEKASGPSPAPKSSDGTWARPVGKVGGEVKLSISYKNNKLFIMVMHIRGLQPLQDGNDPDPY
VKIYLLPDPQKTTKRKTKVARKTCNPTYNEMLVYDGIPKGDLQQRELQLSVLSEQGFWENLLLGEVHIRL
RELDLAQEKTGWFGLGSRGHGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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