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Report for CCDS49069.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49069.1 Public Mus musculus 12 Slc25a21 23 108 98 CCDS HistoryNCBI Gene:217593Re-query CCDS DB by CCDS ID:49069.1Re-query CCDS DB by GeneID:217593See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49069.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000110680.2 ENSMUSP00000106308.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110680.2Link to Ensembl Protein Viewer:ENSMUSP00000106308.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110680Re-query CCDS DB by Protein ID:ENSMUSP00000106308
Original member Current member EBI ENSMUST00000217690.1 ENSMUSP00000151751.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000217690.1Link to Ensembl Protein Viewer:ENSMUSP00000151751.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000217690Re-query CCDS DB by Protein ID:ENSMUSP00000151751
Original member Current member NCBI NM_001167976.1 NP_001161448.1 Accepted alive Link to Nucleotide Sequence:NM_001167976.1Link to Protein Sequence:NP_001161448.1Re-query CCDS DB by Nucleotide ID:NM_001167976Re-query CCDS DB by Protein ID:NP_001161448Link to BLAST:NP_001161448.1

Chromosomal Locations for CCDS 49069.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 56713813 56713874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56717238 56717290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56718140 56718321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56738470 56738634 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56766018 56766125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56770153 56770212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56775326 56775392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56858027 56858110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 56928265 56928313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57159157 57159244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (918 nt):
ATGTGGGCTTGTGTGAATACACATCATGATGTTGATACAAGTGAGTCACCCATTGTCTTCATCAGCTCTT
ACCCCAATCAGGAATCCGGTCTTGTAGAAATTTGCCTGATGCATCCTCTCGATGTGGTGAAAACCAGGTT
CCAGGTGCAGAGAAGTGTAACAGACCCACAAAGTTATAGAACTGTAAGAGGCAGCTTCCAGATGATCTTC
CGAACAGAGGGGTTGTTTGGCTTTTACAAGGGAATTATCCCACCAATTTTAGCTGAAACACCAAAAAGAG
CAGTCAAGTTTTCTACCTTTGAGCTGTACAAGAAATTTCTGGGATATATGTCACTATCACCAGGGCTGAC
ATTTCTCATCGCTGGCTTAGGATCGGGACTAACAGAAGCTGTCGTGGTTAACCCTTTCGAGGTGGTAAAA
GTTGGCTTGCAAGTCAATCGGAACTTGTTCAAAGAGCAACCATCTACTTTTGCTTATGCAAGACAAATCA
TTAAGAAGGAAGGCTTGGGGTTCCAGGGCCTCAACAAAGGATTGACAGCAACTCTGGGACGTCACGGAAT
TTTCAACATGGTTTATTTTGGCTTCTACCACAACGTCAAAAATATTATTCCATCCAGTAAGGATCCAACC
TTGGAGTTTTTGAGAAAATTTGGGATTGGTTTTGTCTCAGGGACAATGGGCTCAGTGTTTAACATCCCCT
TTGATGTTGCAAAGAGTCGGATCCAAGGGCCCCAGCCAGTTCCTGGAGAGATCAAGTACCGAAGCTGCTT
CAAAACAATGGAGATGATCTACCGGGAAGAAGGGATTTTAGCCTTATACAAAGGCCTGGTCCCTAAGGTG
ATGAGACTTGGACCAGGTGGTGGGGTGATGTTGCTGGTGTATGAATACACCTATGCATGGCTGCAGGAAA
ACTGGTGA

Translation (305 aa):
MWACVNTHHDVDTSESPIVFISSYPNQESGLVEICLMHPLDVVKTRFQVQRSVTDPQSYRTVRGSFQMIF
RTEGLFGFYKGIIPPILAETPKRAVKFSTFELYKKFLGYMSLSPGLTFLIAGLGSGLTEAVVVNPFEVVK
VGLQVNRNLFKEQPSTFAYARQIIKKEGLGFQGLNKGLTATLGRHGIFNMVYFGFYHNVKNIIPSSKDPT
LEFLRKFGIGFVSGTMGSVFNIPFDVAKSRIQGPQPVPGEIKYRSCFKTMEMIYREEGILALYKGLVPKV
MRLGPGGGVMLLVYEYTYAWLQENW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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