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Report for CCDS49101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49101.1 Public Mus musculus 12 Slc10a1 23 108 98 CCDS HistoryNCBI Gene:20493Re-query CCDS DB by CCDS ID:49101.1Re-query CCDS DB by GeneID:20493See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000095572.4 ENSMUSP00000093229.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000095572.4Link to Ensembl Protein Viewer:ENSMUSP00000093229.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000095572Re-query CCDS DB by Protein ID:ENSMUSP00000093229
Original member Current member EBI ENSMUST00000218162.1 ENSMUSP00000151555.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000218162.1Link to Ensembl Protein Viewer:ENSMUSP00000151555.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000218162Re-query CCDS DB by Protein ID:ENSMUSP00000151555
Original member Current member NCBI NM_001177561.1 NP_001171032.1 Accepted alive Link to Nucleotide Sequence:NM_001177561.1Link to Protein Sequence:NP_001171032.1Re-query CCDS DB by Nucleotide ID:NM_001177561Re-query CCDS DB by Protein ID:NP_001171032Link to BLAST:NP_001171032.1
Original member Current member NCBI NM_001361972.1 NP_001348901.1 Accepted alive Link to Nucleotide Sequence:NM_001361972.1Link to Protein Sequence:NP_001348901.1Re-query CCDS DB by Nucleotide ID:NM_001361972Re-query CCDS DB by Protein ID:NP_001348901Link to BLAST:NP_001348901.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171032.1 362 O08705-1 362 100% 0 0
NP_001348901.1 362 O08705-1 362 100% 0 0

Chromosomal Locations for CCDS 49101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 80953635 80953780 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80955920 80956116 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80958021 80958199 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80960439 80960649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 80967589 80967944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1089 nt):
ATGGAGGCGCACAACGTATCAGCCCCCTTCAATTTCTCCCTGCCGCCTGGCTTTGGCCACCGGGCCACAG
ACACTGCGCTCAGCGTCATTCTGGTAGTTATGTTGCTGCTCATCATGCTCTCGCTTGGCTGCACCATGGA
GTTCAGCAAGATCAAGGCTCACTTCTGGAAGCCCAAAGGGGTGATCATCGCCATAGTGGCCCAGTACGGT
ATCATGCCCCTCAGTGCTTTCCTTCTGGGCAAGGTCTTTCATCTGACCAGCATTGAGGCTCTGGCCATCC
TCATCTGCGGCTGCTCTCCTGGGGGGAACCTGTCTAACCTCTTCACCCTGGCCATGAAGGGGGACATGAA
CCTCAGCATTGTGATGACCACCTGCTCCAGCTTCACTGCCTTGGGCATGATGCCTCTCCTCTTATACATC
TACAGCAAAGGAATCTACGACGGAGATCTTAAGGACAAGGTGCCCTACAAAGGCATTATGTTATCACTCG
TCATGGTTCTCATTCCTTGCGCCATAGGGATCTTCCTGAAGTCCAAAAGGCCACACTATGTACCCTACGT
CCTCAAGGCAGGCATGATCATCACTTTCTCCCTCTCTGTGGCTGTCACAGTCCTGTCTGTCATCAATGTG
GGCAACAGCATCATGTTCGTCATGACACCACACTTACTGGCTACCTCCTCCCTGATGCCTTTCACTGGCT
TCCTGATGGGCTACATTCTCTCTGCTCTCTTCCGACTAAATCCAAGCTGCAGACGCACCATCAGCATGGA
AACAGGATTCCAAAACGTCCAACTCTGTTCTACCATCCTCAATGTCACCTTCCCCCCTGAAGTCATTGGA
CCACTGTTCTTCTTTCCTCTCCTTTATATGATTTTTCAGCTTGCAGAAGGACTTCTCTTCATTATTATCT
TCCGGTGCTATTTGAAAATCAAACCTCAGAAGGACCAAACAAAAATTACCTACAAGGCTGCTGCAACAGA
AGATGCTACTCCAGCAGCTCTGGAAAAAGGTACCCACAACGGGAATAATCCTCCTACACAACCTGGCCTT
TCCCCTAATGGCCTGAACTCTGGTCAGATGGCAAATTAG

Translation (362 aa):
MEAHNVSAPFNFSLPPGFGHRATDTALSVILVVMLLLIMLSLGCTMEFSKIKAHFWKPKGVIIAIVAQYG
IMPLSAFLLGKVFHLTSIEALAILICGCSPGGNLSNLFTLAMKGDMNLSIVMTTCSSFTALGMMPLLLYI
YSKGIYDGDLKDKVPYKGIMLSLVMVLIPCAIGIFLKSKRPHYVPYVLKAGMIITFSLSVAVTVLSVINV
GNSIMFVMTPHLLATSSLMPFTGFLMGYILSALFRLNPSCRRTISMETGFQNVQLCSTILNVTFPPEVIG
PLFFFPLLYMIFQLAEGLLFIIIFRCYLKIKPQKDQTKITYKAAATEDATPAALEKGTHNGNNPPTQPGL
SPNGLNSGQMAN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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