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Report for CCDS49162.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49162.1 Public Mus musculus 12 Ak7 23 108 98 CCDS HistoryNCBI Gene:78801Re-query CCDS DB by CCDS ID:49162.1Re-query CCDS DB by GeneID:78801See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49162.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040876.6 ENSMUSP00000043145.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040876.6Link to Ensembl Protein Viewer:ENSMUSP00000043145.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000040876Re-query CCDS DB by Protein ID:ENSMUSP00000043145
Original member Current member NCBI NM_030187.1 NP_084463.1 Accepted alive Link to Nucleotide Sequence:NM_030187.1Link to Protein Sequence:NP_084463.1Re-query CCDS DB by Nucleotide ID:NM_030187Re-query CCDS DB by Protein ID:NP_084463Link to BLAST:NP_084463.1

Chromosomal Locations for CCDS 49162.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 12 (NC_000078.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 105706165 105706266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105710145 105710336 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105713503 105713611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105715985 105716079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105726187 105726297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105733433 105733513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105734890 105734978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105738574 105738664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105741009 105741086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105742236 105742385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105745204 105745332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105747186 105747315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105761468 105761596 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105763953 105764021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105766554 105766751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105768530 105768750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105780850 105781008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 105781671 105781709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2172 nt):
ATGGCTGAAGAGGAAGTTCCTGCGACCACCGAAAAAGTTCTGAAGATACAGAGGGTATTCATAAACCATC
TGGACACCTATAGCAGCGGAAACATAGGAAAGTTCCTAGCTAACTGTGTCGCTGGGGCTTCACTGGAAGA
GATTGGAGAGGAGGAGGAGGAGGAGGACGAGACAAAGTCAGCTGTAGCTCCAGAAGCCCCCACTACAAAA
GTGAAGGAAGGCACCTTCCAGATCGTGGGCACCTTGGTCAAGCCAGAGAGTGTCAAGCCAGACTTCGCTG
TGGAGGCTTATAAGGGCATCTCCCGGGAAGACCTGCTCTCGCATCTCATGGAGTGCGATGCTGTCATCTA
TAACATCACAGAGAATGTGCAGCAAGTGGAGGAAGCCTTGTGGGCAGTCTCCGCATTGAATGAAGAAATC
AGCCATTTTGAAAAGCGAAAGGTGTTCATTTTGTTGTCGACAGTGATGACATGGGCGAGATCCAAACCCC
TGGACCCTGACGACAACGAGGTTCCCTTCACAGAAGAGGATTATCGAAGAAGGAAACATCACCCCAACTT
CCTGGACCATATCAACGCTGAAAAAATTGTTCTCAAATTTGGAAAAAATGCCAAAAAGTTCGCAACTTAT
GTAGTCGCCTCAGGACTTCAGTATGGAGCAGAAGGAGGCATCTTACACACGTTTTTTAAGATGGCCTGGC
TGGGCGAGGTCCCCGCACTACCCGTGTTTGGAGATGGGACCAATTGCATTCCGGCCATTCATGTTGTTGA
CCTCGCAGGAGTGATCCAGAACATCATAGACCACGTGCCCAAGCTTCACTACCTGGTGGCTGTGGATGAG
GCTGTGCACACCTTGGAAGACCTGGTCAAGTGCATCAGCAAAAATACCGGCCCTGGAAAGATCCAGAAAG
TGCCCAAAGAAAATGCTTTCCTGACAAAGGACTTGACACAAGAGTACCTCGACCACCTGCTGGTCAACCT
GAGAATGGAAGCCCTGTTTGTGAAGGAGAACTTTAACATCCGCTGGGTCGCCCAAACAGGCTTCGTGGAG
AACATCAACAGCATCCTCAAAGAGTACAAGCAAAGCCGGGGATTACTGCCAATCAAGATCTGCATCCTTG
GTCCTCCTGCTGTGGGAAAATCCAGCATCTCTGAAGAGCTGGCCAAGTACTACAAACTGCATCACATCAA
GATGAAGGATGTGATTGCTGAAGCCATAGCCAAACTGGAGGCGATTGTCGCACCCAAGGACTCAGTGGAA
GGAGAAGAGGAAGGCGAAGAGGAGGAGGAGGAAGAGAACGTGGATGATGCCCAGGAGCTCCTTGATGGCA
TCAAGGAAAGCATGGAGCAGAACGCAGGTCGGCTAGAAGACCAATATATAATTCGATTTGTGAAAGAAAA
GCTCAAATCTATGCCTTGTAGGAACCAAGGTTTCATTTTGGATGGCTTCCCAAAGACCTATGATCAAGCG
AAAGACCTGTTCAACCAGGAAGAGGAAGAGGAAGAAGAAGAAATCAGAGGCAAAATATTTCCCTATGATA
AATTAATTACACCCGAGTTTGTGTGCGGTCTGGACGCATCTGATGAGTTCCTGAAGGAGCGGGTGATGAA
TCTCCCGGAGAGTGTCGTGGCAGGAACTCACTACAGCCAGGACCGATTCCTCCGGTCTCTGAGCCACTAC
CGGGACATCAATACAGATGATGAGACGGTCTTCAACTACTTCGACGAGCTTGAAATTCACCCGATACATA
TCGATGTAGGAAAACTTGAAGACGCCCAGAACAGACTTGCTATCAAACAGCTCATCAAAGAGATCGGGAA
GCCTCGGAATTACGGCTTAACAGACGAAGAAAAGGCAGAGGAGGAGAAGAAAGCAGCGGAGGAACGCCTG
GCCAAGGAGGCTGCTCAGACGGCAGAACTCGAACACAAGGAGGCCATGGAGATGGCGGAGAAGATAGCCC
GCTGGGAGGAGTGGAATAAACGGCTGGAGGAAGTAAAGCGAGAGGAGAGGGAGCTGCTGGAGGTACAGTC
CGTCCCCCTGAGAAACTACCTGATGACGTACGTGATGCCCACGCTCATGCAGGGCCTCAATGAATGCTGC
AAGGTGAGACCCGAAGACCCCGTGGATTTTCTGGCAGAGTATCTCTTCAAGAACAATCCTGAAATGCAGT
AG

Translation (723 aa):
MAEEEVPATTEKVLKIQRVFINHLDTYSSGNIGKFLANCVAGASLEEIGEEEEEEDETKSAVAPEAPTTK
VKEGTFQIVGTLVKPESVKPDFAVEAYKGISREDLLSHLMECDAVIYNITENVQQVEEALWAVSALNEEI
SHFEKRKVFILLSTVMTWARSKPLDPDDNEVPFTEEDYRRRKHHPNFLDHINAEKIVLKFGKNAKKFATY
VVASGLQYGAEGGILHTFFKMAWLGEVPALPVFGDGTNCIPAIHVVDLAGVIQNIIDHVPKLHYLVAVDE
AVHTLEDLVKCISKNTGPGKIQKVPKENAFLTKDLTQEYLDHLLVNLRMEALFVKENFNIRWVAQTGFVE
NINSILKEYKQSRGLLPIKICILGPPAVGKSSISEELAKYYKLHHIKMKDVIAEAIAKLEAIVAPKDSVE
GEEEGEEEEEEENVDDAQELLDGIKESMEQNAGRLEDQYIIRFVKEKLKSMPCRNQGFILDGFPKTYDQA
KDLFNQEEEEEEEEIRGKIFPYDKLITPEFVCGLDASDEFLKERVMNLPESVVAGTHYSQDRFLRSLSHY
RDINTDDETVFNYFDELEIHPIHIDVGKLEDAQNRLAIKQLIKEIGKPRNYGLTDEEKAEEEKKAAEERL
AKEAAQTAELEHKEAMEMAEKIARWEEWNKRLEEVKREERELLEVQSVPLRNYLMTYVMPTLMQGLNECC
KVRPEDPVDFLAEYLFKNNPEMQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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