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Report for CCDS4917.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4917.1 Public Homo sapiens 6 PLA2G7 24 110 108 CCDS HistoryNCBI Gene:7941Re-query CCDS DB by CCDS ID:4917.1Re-query CCDS DB by GeneID:7941See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4917.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000274793.12 ENSP00000274793.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000274793.12Link to Ensembl Protein Viewer:ENSP00000274793.7Re-query CCDS DB by Nucleotide ID:ENST00000274793Re-query CCDS DB by Protein ID:ENSP00000274793
Original member Current member EBI ENST00000537365.1 ENSP00000445666.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537365.1Link to Ensembl Protein Viewer:ENSP00000445666.1Re-query CCDS DB by Nucleotide ID:ENST00000537365Re-query CCDS DB by Protein ID:ENSP00000445666
Original member Current member NCBI NM_001168357.2 NP_001161829.1 Accepted alive Link to Nucleotide Sequence:NM_001168357.2Link to Protein Sequence:NP_001161829.1Re-query CCDS DB by Nucleotide ID:NM_001168357Re-query CCDS DB by Protein ID:NP_001161829Link to BLAST:NP_001161829.1
Original member Current member NCBI NM_005084.4 NP_005075.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_005084.4Link to Protein Sequence:NP_005075.3Re-query CCDS DB by Nucleotide ID:NM_005084Re-query CCDS DB by Protein ID:NP_005075Link to BLAST:NP_005075.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001161829.1 441 Q13093 441 100% 0 0
NP_005075.3 441 Q13093 441 100% 0 0

Chromosomal Locations for CCDS 4917.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 46704560 46704696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46705153 46705301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46707991 46708161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46709327 46709418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46710545 46710658 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46711496 46711619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46712269 46712337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46714460 46714553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46716384 46716528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46716975 46717096 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 46722783 46722891 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1326 nt):
ATGGTGCCACCCAAATTGCATGTGCTTTTCTGCCTCTGCGGCTGCCTGGCTGTGGTTTATCCTTTTGACT
GGCAATACATAAATCCTGTTGCCCATATGAAATCATCAGCATGGGTCAACAAAATACAAGTACTGATGGC
TGCTGCAAGCTTTGGCCAAACTAAAATCCCCCGGGGAAATGGGCCTTATTCCGTTGGTTGTACAGACTTA
ATGTTTGATCACACTAATAAGGGCACCTTCTTGCGTTTATATTATCCATCCCAAGATAATGATCGCCTTG
ACACCCTTTGGATCCCAAATAAAGAATATTTTTGGGGTCTTAGCAAATTTCTTGGAACACACTGGCTTAT
GGGCAACATTTTGAGGTTACTCTTTGGTTCAATGACAACTCCTGCAAACTGGAATTCCCCTCTGAGGCCT
GGTGAAAAATATCCACTTGTTGTTTTTTCTCATGGTCTTGGGGCATTCAGGACACTTTATTCTGCTATTG
GCATTGACCTGGCATCTCATGGGTTTATAGTTGCTGCTGTAGAACACAGAGATAGATCTGCATCTGCAAC
TTACTATTTCAAGGACCAATCTGCTGCAGAAATAGGGGACAAGTCTTGGCTCTACCTTAGAACCCTGAAA
CAAGAGGAGGAGACACATATACGAAATGAGCAGGTACGGCAAAGAGCAAAAGAATGTTCCCAAGCTCTCA
GTCTGATTCTTGACATTGATCATGGAAAGCCAGTGAAGAATGCATTAGATTTAAAGTTTGATATGGAACA
ACTGAAGGACTCTATTGATAGGGAAAAAATAGCAGTAATTGGACATTCTTTTGGTGGAGCAACGGTTATT
CAGACTCTTAGTGAAGATCAGAGATTCAGATGTGGTATTGCCCTGGATGCATGGATGTTTCCACTGGGTG
ATGAAGTATATTCCAGAATTCCTCAGCCCCTCTTTTTTATCAACTCTGAATATTTCCAATATCCTGCTAA
TATCATAAAAATGAAAAAATGCTACTCACCTGATAAAGAAAGAAAGATGATTACAATCAGGGGTTCAGTC
CACCAGAATTTTGCTGACTTCACTTTTGCAACTGGCAAAATAATTGGACACATGCTCAAATTAAAGGGAG
ACATAGATTCAAATGTAGCTATTGATCTTAGCAACAAAGCTTCATTAGCATTCTTACAAAAGCATTTAGG
ACTTCATAAAGATTTTGATCAGTGGGACTGCTTGATTGAAGGAGATGATGAGAATCTTATTCCAGGGACC
AACATTAACACAACCAATCAACACATCATGTTACAGAACTCTTCAGGAATAGAGAAATACAATTAG

Translation (441 aa):
MVPPKLHVLFCLCGCLAVVYPFDWQYINPVAHMKSSAWVNKIQVLMAAASFGQTKIPRGNGPYSVGCTDL
MFDHTNKGTFLRLYYPSQDNDRLDTLWIPNKEYFWGLSKFLGTHWLMGNILRLLFGSMTTPANWNSPLRP
GEKYPLVVFSHGLGAFRTLYSAIGIDLASHGFIVAAVEHRDRSASATYYFKDQSAAEIGDKSWLYLRTLK
QEEETHIRNEQVRQRAKECSQALSLILDIDHGKPVKNALDLKFDMEQLKDSIDREKIAVIGHSFGGATVI
QTLSEDQRFRCGIALDAWMFPLGDEVYSRIPQPLFFINSEYFQYPANIIKMKKCYSPDKERKMITIRGSV
HQNFADFTFATGKIIGHMLKLKGDIDSNVAIDLSNKASLAFLQKHLGLHKDFDQWDCLIEGDDENLIPGT
NINTTNQHIMLQNSSGIEKYN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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