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Report for CCDS4974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4974.1 Public Homo sapiens 6 B3GAT2 24 110 108 CCDS HistoryNCBI Gene:135152Re-query CCDS DB by CCDS ID:4974.1Re-query CCDS DB by GeneID:135152See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4974.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000230053.11 ENSP00000230053.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000230053.11Link to Ensembl Protein Viewer:ENSP00000230053.6Re-query CCDS DB by Nucleotide ID:ENST00000230053Re-query CCDS DB by Protein ID:ENSP00000230053
Original member Current member NCBI NM_080742.3 NP_542780.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_080742.3Link to Protein Sequence:NP_542780.1Re-query CCDS DB by Nucleotide ID:NM_080742Re-query CCDS DB by Protein ID:NP_542780Link to BLAST:NP_542780.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_542780.1 323 Q9NPZ5 323 100% 0 0

Chromosomal Locations for CCDS 4974.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 70861663 70861749 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70861830 70861978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70894128 70894272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 70955839 70956429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (972 nt):
ATGAAGTCCGCGCTTTTCACCCGCTTCTTTATCCTCCTGCCCTGGATCCTAATTGTCATCATCATGCTCG
ACGTGGACACGCGCAGGCCAGTGCCCCCGCTCACCCCGCGCCCCTACTTCTCTCCCTACGCGGTGGGCCG
CGGGGGCGCCCGACTCCCGCTCCGCAGGGGCGGCCCGGCTCACGGGACCCAAAAGCGCAACCAGTCTCGG
CCGCAGCCACAGCCGGAGCCGCAGCTGCCCACCATCTATGCCATCACGCCCACCTACAGCCGCCCGGTGC
AGAAAGCGGAGCTGACCCGCCTGGCCAACACGTTCCGCCAGGTGGCGCAGCTGCACTGGATCCTGGTGGA
GGACGCGGCGGCGCGCAGCGAGCTGGTGAGCCGCTTCCTGGCGCGGGCCGGGCTGCCCAGCACTCACCTG
CACGTGCCCACGCCGCGGCGCTACAAGCGGCCCGGGCTGCCGCGCGCCACTGAGCAGCGCAACGCGGGCC
TCGCCTGGCTGCGCCAGAGGCACCAGCACCAGCGCGCGCAGCCCGGCGTGCTCTTCTTCGCTGACGACGA
CAACACCTATAGTCTGGAGCTCTTCCAGGAGATGCGAACCACCCGCAAGGTCTCCGTCTGGCCTGTGGGC
CTGGTTGGTGGGCGGCGCTACGAACGTCCGCTGGTGGAAAACGGCAAAGTTGTTGGCTGGTACACCGGCT
GGAGAGCAGACAGGCCTTTTGCCATCGACATGGCAGGATTTGCTGTAAGTCTTCAAGTCATTTTGTCCAA
TCCAAAAGCTGTATTTAAGCGTCGTGGATCCCAGCCAGGGATGCAAGAATCTGACTTTCTCAAACAGATA
ACAACAGTCGAAGAACTGGAACCGAAAGCAAATAACTGCACTAAGGTTCTCGTGTGGCACACTCGGACAG
AGAAGGTTAATCTAGCCAACGAGCCAAAGTACCACCTGGACACAGTGAAAATTGAGGTATAA

Translation (323 aa):
MKSALFTRFFILLPWILIVIIMLDVDTRRPVPPLTPRPYFSPYAVGRGGARLPLRRGGPAHGTQKRNQSR
PQPQPEPQLPTIYAITPTYSRPVQKAELTRLANTFRQVAQLHWILVEDAAARSELVSRFLARAGLPSTHL
HVPTPRRYKRPGLPRATEQRNAGLAWLRQRHQHQRAQPGVLFFADDDNTYSLELFQEMRTTRKVSVWPVG
LVGGRRYERPLVENGKVVGWYTGWRADRPFAIDMAGFAVSLQVILSNPKAVFKRRGSQPGMQESDFLKQI
TTVEELEPKANNCTKVLVWHTRTEKVNLANEPKYHLDTVKIEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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