NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS49754.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49754.1 Public Mus musculus 16 Abat 23 108 98 CCDS HistoryNCBI Gene:268860Re-query CCDS DB by CCDS ID:49754.1Re-query CCDS DB by GeneID:268860See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49754.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000115839.8 ENSMUSP00000111505.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000115839.8Link to Ensembl Protein Viewer:ENSMUSP00000111505.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000115839Re-query CCDS DB by Protein ID:ENSMUSP00000111505
Original member Current member NCBI NM_001170978.1 NP_001164449.1 Accepted alive Link to Nucleotide Sequence:NM_001170978.1Link to Protein Sequence:NP_001164449.1Re-query CCDS DB by Nucleotide ID:NM_001170978Re-query CCDS DB by Protein ID:NP_001164449Link to BLAST:NP_001164449.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001164449.1 444 P61922-2 444 100% 0 0

Chromosomal Locations for CCDS 49754.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 8572881 8572950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8578231 8578328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8581899 8581928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8582737 8582854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8588886 8588935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8600910 8600990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8602286 8602378 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8603470 8603532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8603689 8603752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8605512 8605660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8608856 8608993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8613983 8614129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8615890 8616001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 8618505 8618626 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1335 nt):
ATGGCCTTCTTGTTGATTACCCGACGGCTGGCCTGCAGTTCCCAGAAAAACCTCCACCTCTTCATACCTG
GATCCAGATATATCAGCCAAGCCGCTGCCAAAGTTGACATTGAATTTGATTATGATGGACCACTCATGAA
GACGGAAGTCCCGGGGCCTAGATCTAAGGAACTAATGAAACAGCTGAACACAATCCAGAATGCAGAGGCC
GTGCACTTTTTCTGCAACTATGAAGAGAGCAGAGGTAACTACCTAGTGGACGTGGACGGCAACCGCATGT
TGGACCTGTATTCTCAGATCTCCTCTGTGCCCATAGGTTACAACCATCCGGCTCTGGCGAAACTCGTTCA
ACAGCCTCAGAACGCGAGCACTTTCATCAACAGACCTGCCTTGGGCATCCTGCCTCCAGAGAACTTTGTG
GACAAGCTCCAGGAGTCCTTGATGTCGGTGGCGCCCAGGGGCATGTCCCAGCTCATCACCATGGCCTGTG
GCTCCTGCTCCAATGAGAATGCATTCAAGACCATCTTCATGTGGTACCGGAGTAAGGAACGAGGGCAGAG
AGGTTTCTCCAAAGAGGAGCTGGAGACTTGCATGGTTAACCAGAGTCCTGGATGCCCAGACTACAGCATT
CTCTCCTTCATGGGTGCTTTCCATGGGAGGACCATGGGTTGCTTAGCGACCACACACTCCAAAGCAATTC
ACAAGATTGACATCCCTTCCTTTGACTGGCCCATTGCTCCATTCCCACGGCTGAAATATCCCCTGGAGGA
GTTTACAACGGACAACCAGCAAGAGGAGGCCCGCTGCCTAGAAGAGGTGGAGGATTTAATTGTGAAATAT
CGGAAAAAGAAGAGAACGGTGGCTGGAATCATCGTGGAGCCCATCCAGTCCGAGGGTGGAGACAACCATG
CATCAGATGACTTCTTCCGGAAGCTGAGAGACATAGCCAGGAAGCCTTACCGGATTTTCAATACCTGGCT
GGGGGACCCATCCAAGAACTTGCTGCTGGCTGAGGTCATCAACATCATCAAGCGGGAAGACCTGCTCAAC
AATGTGGCCCGTGTGGGGAAGACCCTACTCACAGGGCTGCTGGACCTCCAGGCCCAGTACCCTCAGTTCA
TCAGCAGAGTGAGGGGACGAGGCACCTTCTGTTCCTTCGACACTCCCGATGAAGCCATACGGAATAAACT
CATCCTAATTGCCAGGAACAAAGGTGTGGTACTGGGGGGCTGCGGTGACAAGTCCATCCGTTTCCGCCCC
ACGCTGGTCTTCAGGGATCACCACGCCCATCTGTTCCTCAGCATTTTCAGCGGCATCTTAGCAGACTTCA
AGTAA

Translation (444 aa):
MAFLLITRRLACSSQKNLHLFIPGSRYISQAAAKVDIEFDYDGPLMKTEVPGPRSKELMKQLNTIQNAEA
VHFFCNYEESRGNYLVDVDGNRMLDLYSQISSVPIGYNHPALAKLVQQPQNASTFINRPALGILPPENFV
DKLQESLMSVAPRGMSQLITMACGSCSNENAFKTIFMWYRSKERGQRGFSKEELETCMVNQSPGCPDYSI
LSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFTTDNQQEEARCLEEVEDLIVKY
RKKKRTVAGIIVEPIQSEGGDNHASDDFFRKLRDIARKPYRIFNTWLGDPSKNLLLAEVINIIKREDLLN
NVARVGKTLLTGLLDLQAQYPQFISRVRGRGTFCSFDTPDEAIRNKLILIARNKGVVLGGCGDKSIRFRP
TLVFRDHHAHLFLSIFSGILADFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH