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Report for CCDS49878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49878.1 Public Mus musculus 16 Cpox 23 108 98 CCDS HistoryNCBI Gene:12892Re-query CCDS DB by CCDS ID:49878.1Re-query CCDS DB by GeneID:12892See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 49878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000060077.6 ENSMUSP00000055455.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000060077.6Link to Ensembl Protein Viewer:ENSMUSP00000055455.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000060077Re-query CCDS DB by Protein ID:ENSMUSP00000055455
Original member Current member NCBI NM_007757.2 NP_031783.2 Accepted alive Link to Nucleotide Sequence:NM_007757.2Link to Protein Sequence:NP_031783.2Re-query CCDS DB by Nucleotide ID:NM_007757Re-query CCDS DB by Protein ID:NP_031783Link to BLAST:NP_031783.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031783.2 443 P36552 443 100% 0 0

Chromosomal Locations for CCDS 49878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 58670428 58670950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58672528 58672671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58673336 58673446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58674380 58674521 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58675242 58675460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58677945 58678049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 58678670 58678757 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGGCCTTGCGGCTGGGCCGCCTGGGTTCGGACCCCTGGTGGCGAGCGGTGCTGGGCGACTATGCTCAGC
TGCGCGCCGCGTCCCCGCGCTGCGCGTCCGCCCGCGTCTGCCAGCTGCCTGGCACGGCTGGTCCCCAGCC
TCGCCGCGGGCTGGGCTACGGCCCCTGGGCTAGAGGCGGGTCCGGGCTGGGGACCCGGCTGGCCGCGACG
CTGGCGGGGTTGGCAGGGCTGGCAGCCGCCGCCTTTGGGCACGTGCAGCGGGCGGAGATGGTGCCCAAGA
GCTCGGGGGCGCGGAGCCCCTCACCTGGACGGCGGGAGGAGGACGGGGACGAGCTGGCCCGCCGCTGCAG
CACCTTCATGTCCTCGCCGGTGACCGAGCTGCGGGAGCTGCGGAGGAGGCCGGAGGACATGAAGACCAAG
ATGGAGCTGATGATTATGGAGACCCAGGCTCAGGTGTGTCGGGCACTGGCGCAGGTAGATGGCGTTGCCG
ACTTCACTGTGGACCGGTGGGAGAGGAAAGAAGGAGGAGGTGGCATCACCTGTGTGCTTCAGGACGGGCG
TGTGTTTGAAAAGGCCGGGGTGAGCATTTCCGTCGTTCATGGGAATCTTTCTGAGGAAGCAGCGAACCAA
ATGAGAGGCAGAGGCAAAACTCTGAAGACGAAAGATAGTAAATTGCCATTTACTGCTATGGGTGTAAGTT
CTGTGATTCACCCCAAGAATCCTTATGCGCCCACCATGCATTTCAACTACAGATACTTTGAAGTAGAGGA
AGCTGACGGTAACACACACTGGTGGTTTGGGGGTGGCTGTGACCTCACACCGACATACTTGAACCAAGAG
GATGCTGTCCATTTCCACCGTACTCTAAAGGAAGCTTGCGATCAGCATGGGCCAGACATCTACCCAAAGT
TTAAAAAATGGTGTGACGACTACTTCTTTATAGTTCACCGCGGGGAGCGGAGGGGCATCGGCGGCATCTT
TTTTGACGATCTTGACTCCCCCTCCAAGGAGGAGGCTTTCCGCTTCGTGAAGACGTGTGCTGAGGCTGTG
GTCCCTTCCTATGTTCCCATTGTGAAGAAGCACTGCGATGACTCCTACACCCCCAGGGACAAGCTGTGGC
AGCAGCTGAGGAGAGGGCGGTATGTGGAGTTTAATCTGTTGTATGATCGGGGCACCAAGTTTGGCCTCTT
TACTCCAGGATCCAGGATCGAAAGTATCTTGATGTCTTTACCTCTAACAGCAAGATGGGAGTACATGCAT
TCTCCCCCAGAGAATTCCAAAGAAGCTGAAATTCTGGAAGTGTTGCGCCATCCAAAGGACTGGGTGCACT
GA

Translation (443 aa):
MALRLGRLGSDPWWRAVLGDYAQLRAASPRCASARVCQLPGTAGPQPRRGLGYGPWARGGSGLGTRLAAT
LAGLAGLAAAAFGHVQRAEMVPKSSGARSPSPGRREEDGDELARRCSTFMSSPVTELRELRRRPEDMKTK
MELMIMETQAQVCRALAQVDGVADFTVDRWERKEGGGGITCVLQDGRVFEKAGVSISVVHGNLSEEAANQ
MRGRGKTLKTKDSKLPFTAMGVSSVIHPKNPYAPTMHFNYRYFEVEEADGNTHWWFGGGCDLTPTYLNQE
DAVHFHRTLKEACDQHGPDIYPKFKKWCDDYFFIVHRGERRGIGGIFFDDLDSPSKEEAFRFVKTCAEAV
VPSYVPIVKKHCDDSYTPRDKLWQQLRRGRYVEFNLLYDRGTKFGLFTPGSRIESILMSLPLTARWEYMH
SPPENSKEAEILEVLRHPKDWVH


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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