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Report for CCDS49906.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
49906.1 Public Mus musculus 16 Synj1 23 108 98 CCDS HistoryNCBI Gene:104015Re-query CCDS DB by CCDS ID:49906.1Re-query CCDS DB by GeneID:104015See the combined annotation on chromosome 16 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 49906.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170853.7 ENSMUSP00000128997.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170853.7Link to Ensembl Protein Viewer:ENSMUSP00000128997.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170853Re-query CCDS DB by Protein ID:ENSMUSP00000128997
Original member NCBI NM_001045515.1 NP_001038980.1 Updated not alive Link to Nucleotide Sequence:NM_001045515.1Link to Protein Sequence:NP_001038980.1Re-query CCDS DB by Nucleotide ID:NM_001045515Re-query CCDS DB by Protein ID:NP_001038980
Current member NCBI NM_001045515.2 NP_001038980.1 Accepted alive Link to Nucleotide Sequence:NM_001045515.2Link to Protein Sequence:NP_001038980.1Re-query CCDS DB by Nucleotide ID:NM_001045515Re-query CCDS DB by Protein ID:NP_001038980Link to BLAST:NP_001038980.1

Chromosomal Locations for CCDS 49906.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 16 (NC_000082.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16See the combined annotation on chromosome 16 in Sequence Viewer

Chromosome Start Stop Links
16 90940476 90940496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90944355 90944575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90944799 90944907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90946792 90946862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90947015 90947053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90948066 90948113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90949699 90949737 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90950351 90950485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90951800 90952009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90955309 90955471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90957594 90957672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90960244 90960459 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90960560 90960677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90961374 90961530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90963818 90963976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90964213 90964405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90964505 90964645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90967300 90967384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90969183 90969374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90971564 90971587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90973910 90974066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90976599 90976751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90978689 90978770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90979751 90979920 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90980949 90981045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90981808 90981869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90987340 90987423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90988142 90988367 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90991380 90991647 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 90993941 90994027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16
16 91010024 91010147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 16Link to Ensembl Genome Browser on chromosome 16

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3930 nt):
ATGGCGTTCAGCAAAGGATTTCGAATCTACCACAAATTGGATCCCCCACCGTTCAGCCTCATAGTGGAAA
CTAGGCATAAGGAAGAATGTCTCATGTTCGAGTCTGGGGCTGTGGCTGTGCTCTCATCTGCAGAAAAGGA
GGCTATTAAAGGCACATATGCCAAAGTACTGGATGCATACGGACTTTTGGGAGTTTTACGATTAAATCTT
GGTGATACCATGCTGCACTATCTGGTCCTAGTCACTGGATGCATGTCTGTGGGGAAAATCCAAGAATCTG
AAGTTTTCCGAGTTACTTCCACTGAGTTTATATCATTGCGAGTTGATGCTTCAGATGAGGACCGCATTTC
GGAAGTACGAAAAGTTTTGAACTCGGGAAACTTTTATTTTGCATGGTCTGCATCTGGAGTCAGCTTAGAT
CTGAGTCTGAATGCACATCGAAGCATGCAAGAGCACACAACCGACAATAGGTTTTTCTGGAATCAGTCTC
TGCATTTGCATCTCAAGCACTATGGTGTGAACTGCGATGACTGGTTATTACGGCTCATGTGTGGGGGAGT
AGAGATTAGAACCATTTATGCTGCCCATAAACAGGCAAAAGCTTGCCTCATCTCAAGACTAAGCTGTGAA
CGAGCTGGGACAAGGTTCAATGTCCGGGGAACCAACGATGATGGTCATGTTGCCAACTTTGTAGAGACAG
AGCAGGTTATATACTTAGATGACTGTGTCTCTTCCTTCATACAAATCCGAGGATCTGTTCCATTGTTCTG
GGAGCAACCAGGGTTGCAAGTGGGATCCCATCGTGTTCGTATGTCAAGGGGATTTGAAGCCAATGCGCCT
GCCTTTGACAGGCATTTCCGAACACTTAAGGACTTATATGGTAAACAGATAGTAGTGAATCTGCTTGGGT
CTAAGGAAGGCGAGCATATGCTGAGCAAGGCTTTCCAGAGTCATTTAAAAGCCTCTGAACACGCTTCTGA
TATCCACATGGTGTCTTTTGACTATCATCAAATGGTTAAAGGAGGAAAGGCAGAAAAACTACACAGTATT
CTCAAACCACAAGTCCAGAAGTTTCTAGATTATGGATTTTTTTATTTCGATGGCAGTGAAGTTCAAAGGT
GCCAGAGTGGTACAGTTCGAACAAACTGCTTGGATTGTCTGGATAGAACAAATAGTGTGCAGGCATTCCT
TGGCTTAGAGATGCTCGCTAAGCAGCTGGAAGCTCTGGGCTTGGCTGAGAAGCCTCAGCTGGTGACCCGC
TTCCAAGAAGTTTTCCGGTCCATGTGGTCTGTGAATGGCGACTCAATCAGTAAAATATATGCAGGCACCG
GGGCCCTGGAAGGGAAGGCCAAGTTAAAAGATGGTGCGCGATCTGTCACCAGAACCATCCAGAATAACTT
CTTCGACAGCTCCAAGCAGGAAGCCATTGATGTCCTGCTCCTGGGAAATACTCTCAACAGCGATTTAGCT
GACAAAGCCCGAGCGCTTCTAACTACTGGAAGTTTGCGTGTTTCTGAACAGACATTACAGTCAGCATCTT
CCAAAGTCTTAAAGAACATGTGTGAGAACTTCTACAAATACTCAAAGCCCAAGAAGATCCGAGTGTGTGT
TGGCACCTGGAATGTGAACGGCGGGAAGCAGTTCCGCAGCATAGCGTTCAAGAACCAGACGCTCACAGAC
TGGCTTCTGGACGCTCCCAAGTTAGCCGGCATCCAGGAGTTTCAAGATAAGAGAAGTAAGCCAACTGATA
TATTTGCAATTGGCTTTGAAGAAATGGTGGAGCTGAATGCTGGGAACATTGTGAATGCAAGCACAACCAA
CCAGAAGCTGTGGGCAGTGGAGCTGCAGAAGACCATCTCCAGGGACAACAAGTATGTCCTGCTGGCCTCG
GAGCAGCTGGTGGGTGTCTGCCTGTTTGTCTTTATCAGACCACAGCACGCTCCTTTTATCAGGGATGTTG
CAGTTGATACTGTGAAAACTGGCATGGGAGGTGCAACTGGAAACAAGGGCGCCGTTGCAATTCGGATGCT
CTTCCACACCACCAGCCTTTGCTTCGTCTGCAGCCACTTTGCTGCAGGGCAGTCCCAAGTCAAAGAGAGA
AATGAAGATTTTGTAGAAATAGCACGAAAACTGAGTTTCCCCATGGGACGAATGCTCTTCTCCCATGACT
ATGTATTTTGGTGTGGTGATTTCAACTATCGAATTGACCTTCCGAATGAAGAGGTTAAAGAGCTCATAAG
ACAACAAAACTGGGATTCTCTGATCGCTGGGGATCAGCTCATCAACCAGAAAAATGCAGGACAGATCTTT
AGAGGATTCTTAGAGGGAAAAGTAACGTTTGCTCCAACCTATAAATATGACTTGTTTTCTGAAGACTATG
ACACCAGTGAGAAGTGTCGCACCCCTGCTTGGACAGACCGTGTCCTCTGGAGAAGGAGGAAGTGGCCTTT
TGACAGATCAGCTGAAGATTTAGATCTCCTGAATGCTAGTTTCCAAGATGAAAGTAAAATTCTTTATACA
TGGACCCCTGGCACCTTGCTGCACTATGGAAGAGCCGAGCTGAAGACTTCTGACCATAGGCCCGTCGTTG
CCTTGATTGACATAGATATATTTGAAGTTGAAGCTGAAGAGAGACAAAAAATTTATAAAGAAGTTATTGC
CGTCCAGGGCCCACCAGATGGCACAGTGCTGGTCTCAATCAAAAGTTCTGCACAAGAAAGTACTTTTTTT
GATGATGCTTTGATTGATGAGCTTCTGCGGCAGTTTGCACACTTTGGTGAAGTTATACTCATAAGATTTG
TAGAAGATAAAATGTGGGTTACATTTTTGGAGGGAAGCTCTGCCTTGAATGCTCTGAGCCTAAATGGGAA
AGAGCTATTAAATCGGACTATAACAATTACTTTAAAAAGTCCAGACTGGATCAAACATTTGGAAGAAGAG
ATGAGTTTAGAGAAAATCAGTGTCACGTTGCCCTCATCAGCAAGCTCCACCCTGCTTGGTGAAGACGCAG
AGGTCGCAGCAGACTTTGACATGGAAGGTGACGTCGATGACTACAGCGCTGAAGTAGAGGAGCTTCTTCC
TCAGCATCTGCAGCCGTCCTCAAGTTCTGGCCTGGGCACTTCTCCAAGTTCTTCACCCCGGACCAGTCCC
TGCCAGTCCCCCACAGTACCAGAGTACTCCGCCCCTTCTCTTCCCATCAGACCTAGCCGAGCACCGTCAA
GAACTCCAGGACCTCCAAGTTCGCAGGGCTCTCCAGTTGACACTCAGCCAGCGGCCCAGAAGGATTCTTC
CCAGACTCTAGAGCCCAAGAGACCACCCCCTCCCCGCCCAGTCGCTCCTCCGGCACGTCCTGCCCCACCA
CAGAGACCACCTCCACCTTCAGGGGCTAGGAGTCCTGCGCCTGCTAGAAAAGAATTTGGAGGTGTTGGAG
CCCCTCCCAGTCCCGGGGTTGCTAGGAGAGAGATAGAAGCACCCAAAAGCCCTGGAACAGCACGGAAAGA
TAATATAGGGCGTAATCAGCCTTCCCCTCAAGCCGGACTTGCAGGCCCAGGACCCGCTGGATACGGTGCG
GCTAGACCGACAATTCCAGCTCGTGCTGGAGTGATCAGCGCCCCTCAGAGCCAGGCTCGGGTATGTGCTG
GAAGGCCGACTCCTGACAGCCAAAGCAAGCCCTCGGAGACATTGAAAGGTCCTGCTGTCCTTCCAGAACC
ACTGAAGCCTCAGGCTGCATTTCCTCAGCAGCCTTCTCTGCCCACACCTGCTCAAAAGTTACAGGACCCG
CTTGTCCCCATAGCAGCACCTACTATGCCTCCCTCTGGCCCCCAACCAAATTTGGAAACCCCCCCACAGC
CCCCACCTCGGAGCAGGTCATCTCAAAGCTTGCCTTCAGACTCCTCACCACAGCTGCAGCAGGAGCAACC
AACAGGGTAA

Translation (1309 aa):
MAFSKGFRIYHKLDPPPFSLIVETRHKEECLMFESGAVAVLSSAEKEAIKGTYAKVLDAYGLLGVLRLNL
GDTMLHYLVLVTGCMSVGKIQESEVFRVTSTEFISLRVDASDEDRISEVRKVLNSGNFYFAWSASGVSLD
LSLNAHRSMQEHTTDNRFFWNQSLHLHLKHYGVNCDDWLLRLMCGGVEIRTIYAAHKQAKACLISRLSCE
RAGTRFNVRGTNDDGHVANFVETEQVIYLDDCVSSFIQIRGSVPLFWEQPGLQVGSHRVRMSRGFEANAP
AFDRHFRTLKDLYGKQIVVNLLGSKEGEHMLSKAFQSHLKASEHASDIHMVSFDYHQMVKGGKAEKLHSI
LKPQVQKFLDYGFFYFDGSEVQRCQSGTVRTNCLDCLDRTNSVQAFLGLEMLAKQLEALGLAEKPQLVTR
FQEVFRSMWSVNGDSISKIYAGTGALEGKAKLKDGARSVTRTIQNNFFDSSKQEAIDVLLLGNTLNSDLA
DKARALLTTGSLRVSEQTLQSASSKVLKNMCENFYKYSKPKKIRVCVGTWNVNGGKQFRSIAFKNQTLTD
WLLDAPKLAGIQEFQDKRSKPTDIFAIGFEEMVELNAGNIVNASTTNQKLWAVELQKTISRDNKYVLLAS
EQLVGVCLFVFIRPQHAPFIRDVAVDTVKTGMGGATGNKGAVAIRMLFHTTSLCFVCSHFAAGQSQVKER
NEDFVEIARKLSFPMGRMLFSHDYVFWCGDFNYRIDLPNEEVKELIRQQNWDSLIAGDQLINQKNAGQIF
RGFLEGKVTFAPTYKYDLFSEDYDTSEKCRTPAWTDRVLWRRRKWPFDRSAEDLDLLNASFQDESKILYT
WTPGTLLHYGRAELKTSDHRPVVALIDIDIFEVEAEERQKIYKEVIAVQGPPDGTVLVSIKSSAQESTFF
DDALIDELLRQFAHFGEVILIRFVEDKMWVTFLEGSSALNALSLNGKELLNRTITITLKSPDWIKHLEEE
MSLEKISVTLPSSASSTLLGEDAEVAADFDMEGDVDDYSAEVEELLPQHLQPSSSSGLGTSPSSSPRTSP
CQSPTVPEYSAPSLPIRPSRAPSRTPGPPSSQGSPVDTQPAAQKDSSQTLEPKRPPPPRPVAPPARPAPP
QRPPPPSGARSPAPARKEFGGVGAPPSPGVARREIEAPKSPGTARKDNIGRNQPSPQAGLAGPGPAGYGA
ARPTIPARAGVISAPQSQARVCAGRPTPDSQSKPSETLKGPAVLPEPLKPQAAFPQQPSLPTPAQKLQDP
LVPIAAPTMPPSGPQPNLETPPQPPPRSRSSQSLPSDSSPQLQQEQPTG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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