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Report for CCDS4994.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4994.1 Public Homo sapiens 6 BCKDHB 24 110 108 CCDS HistoryNCBI Gene:594Re-query CCDS DB by CCDS ID:4994.1Re-query CCDS DB by GeneID:594See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4994.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000320393.9 ENSP00000318351.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000320393.9Link to Ensembl Protein Viewer:ENSP00000318351.5Re-query CCDS DB by Nucleotide ID:ENST00000320393Re-query CCDS DB by Protein ID:ENSP00000318351
Original member Current member EBI ENST00000356489.9 ENSP00000348880.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000356489.9Link to Ensembl Protein Viewer:ENSP00000348880.5Re-query CCDS DB by Nucleotide ID:ENST00000356489Re-query CCDS DB by Protein ID:ENSP00000348880
Original member Current member NCBI NM_000056.5 NP_000047.1 Accepted alive Link to Nucleotide Sequence:NM_000056.5Link to Protein Sequence:NP_000047.1Re-query CCDS DB by Nucleotide ID:NM_000056Re-query CCDS DB by Protein ID:NP_000047Link to BLAST:NP_000047.1
Original member Current member NCBI NM_183050.4 NP_898871.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_183050.4Link to Protein Sequence:NP_898871.1Re-query CCDS DB by Nucleotide ID:NM_183050Re-query CCDS DB by Protein ID:NP_898871Link to BLAST:NP_898871.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_000047.1 392 P21953-1 392 100% 0 0
NP_898871.1 392 P21953-1 392 100% 0 0

Chromosomal Locations for CCDS 4994.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 80106694 80106889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80127547 80127624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80129161 80129229 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80167678 80167811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80168875 80169030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80171282 80171390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80200934 80201031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80203102 80203212 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80273135 80273221 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 80343664 80343804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1179 nt):
ATGGCGGTTGTAGCGGCGGCTGCCGGCTGGCTACTCAGGCTCAGGGCGGCAGGGGCTGAGGGGCACTGGC
GT
CGGCTTCCTGGCGCGGGGCTGGCGCGGGGCTTTTTGCACCCCGCCGCGACTGTCGAGGATGCGGCCCA
G
AGGCGGCAGGTGGCTCATTTTACTTTCCAGCCAGATCCGGAGCCCCGGGAGTACGGGCAAACTCAGAAA
ATG
AATCTTTTCCAGTCTGTAACAAGTGCCTTGGATAACTCATTGGCCAAAGATCCTACTGCAGTAATAT
TT
GGTGAAGATGTTGCCTTTGGTGGAGTCTTTAGATGCACTGTTGGCTTGCGAGACAAATATGGAAAAGA
T
AGAGTTTTTAATACCCCATTGTGTGAACAAGGAATTGTTGGATTTGGAATCGGAATTGCGGTCACTGGA
GCT
ACTGCCATTGCGGAAATTCAGTTTGCAGATTATATTTTCCCTGCATTTGATCAGATTGTTAATGAAG
CT
GCCAAGTATCGCTATCGCTCTGGGGATCTTTTTAACTGTGGAAGCCTCACTATCCGGTCCCCTTGGGG
C
TGTGTTGGTCATGGGGCTCTCTATCATTCTCAGAGTCCTGAAGCATTTTTTGCCCATTGCCCAGGAATC
AAG
GTGGTTATACCCAGAAGCCCTTTCCAGGCCAAAGGACTTCTTTTGTCATGCATAGAGGATAAAAATC
CT
TGTATATTTTTTGAACCTAAAATACTTTACAGGGCAGCAGCGGAAGAAGTCCCTATAGAACCATACAA
C
ATCCCACTGTCCCAGGCCGAAGTCATACAGGAAGGGAGTGATGTTACTCTAGTTGCCTGGGGCACTCAG
GTT
CATGTGATCCGAGAGGTAGCTTCCATGGCAAAAGAAAAGCTTGGAGTGTCTTGTGAAGTCATTGATC
TG
AGGACTATAATACCTTGGGATGTGGACACAATTTGTAAGTCTGTGATCAAAACAGGGCGACTGCTAAT
C
AGTCACGAGGCTCCCTTGACAGGCGGCTTTGCATCGGAAATCAGCTCTACAGTTCAGGAGGAATGTTTC
TTG
AACCTAGAGGCTCCTATATCAAGAGTATGTGGTTATGACACACCATTTCCTCACATTTTTGAACCAT
TC
TACATCCCAGACAAATGGAAGTGTTATGATGCCCTTCGAAAAATGATCAACTATTGA


Translation (392 aa):
MAVVAAAAGWLLRLRAAGAEGHWRRLPGAGLARGFLHPAATVEDAAQRRQVAHFTFQPDPEPREYGQTQK
M
NLFQSVTSALDNSLAKDPTA
VIFGEDVAFGGVFRCTVGLRDKYGKDRVFNTPLCEQGIVGFGIGIAVTG
A
TAIAEIQFADYIFPAFDQ
IVNEAAKYRYRSGDLFNCGSLTIRSPWGCVGHGALYHSQSPEAFFAHCPGI
K
VVIPRSPFQAKGLLLSCIEDKNPCIFFEPKILYRAAAEEVPIEPYNIPLSQAEVIQEGSDVTLVAWGTQ
V
HVIREVASMAKEKLGVSCEVIDLRTIIPWDVDTICK
SVIKTGRLLISHEAPLTGGFASEISSTVQEECF
L
NLEAPISRVCGYDTPFPHIFEPFYIPDKWKCYDALRKMINY




Links Key
 Links to:   History report
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 Genome Browser Links:   Ensembl Genome Browser
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