NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50021.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50021.1 Public Mus musculus 17 Hagh 23 108 98 CCDS HistoryNCBI Gene:14651Re-query CCDS DB by CCDS ID:50021.1Re-query CCDS DB by GeneID:14651See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 50021.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000024974.15 ENSMUSP00000024974.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000024974.15Link to Ensembl Protein Viewer:ENSMUSP00000024974.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000024974Re-query CCDS DB by Protein ID:ENSMUSP00000024974
Original member NCBI NM_001159626.1 NP_001153098.1 Updated not alive Link to Nucleotide Sequence:NM_001159626.1Link to Protein Sequence:NP_001153098.1Re-query CCDS DB by Nucleotide ID:NM_001159626Re-query CCDS DB by Protein ID:NP_001153098
Current member NCBI NM_001159626.2 NP_001153098.1 Accepted alive Link to Nucleotide Sequence:NM_001159626.2Link to Protein Sequence:NP_001153098.1Re-query CCDS DB by Nucleotide ID:NM_001159626Re-query CCDS DB by Protein ID:NP_001153098Link to BLAST:NP_001153098.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153098.1 260 Q99KB8-2 260 99.6154% 0 1

Chromosomal Locations for CCDS 50021.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 17 (NC_000083.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 24852802 24852906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24853632 24853696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24856638 24856755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24857516 24857624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24860946 24861049 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24861313 24861414 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24863677 24863756 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 24864193 24864292 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGAAGGTTGAACTACTGCCTGCCCTGACTGACAACTACATGTACCTGATCATTGATGAGGACACCCAGG
AGGCCGCCATCGTGGACCCAGTGCAACCACAGAAGGTTATAGAAGCTGCGAAAAAGCACCGTGTGAAACT
GACCACAGTGCTCACCACTCACCACCACTGGGACCACGCTGGTGGGAACGAGAAGCTGGTGAAGCTGGAG
CCTGGGCTGAAGGTTTATGGAGGTGATGACCGCATCGGAGCCTTGACTCACAAGGTCACACACCTCTCCA
CACTGCAGGTGGGGTCTCTCAGTGTCAAATGCCTGTCAACACCCTGCCATACTTCGGGACACATCTGTTA
CTTTGTGAGCAAGCCTGGGAGCTCAGAGCCTTCTGCTGTGTTCACAGGTGACACATTGTTTGTTGCTGGC
TGTGGGAAGTTCTATGAGGGAACTGCAGATGAGATGTACAAGGCGCTGCTTGAAGTCTTGGGCCGGCTTC
CTCCAGACACAAAAGTCTACTGTGGTCATGAATACACCGTAAACAACCTTAAGTTTGCACGCCATGTGGA
GCCCGGCAATGCTGCCATTCAAGAGAAACTAGCCTGGGCCAAGGAGAAGTATGCCATCGGGGAGCCCACG
GTGCCATCCACCCTGGCAGAAGAGTTCACCTACAACCCCTTCATGAGAGTGAAGGAGAAGACTGTGCAAC
AGCATGCTGGCGAGACAGACCCTGTGACCACCATGAGGGCCATCCGCAGGGAGAAGGACCAGTTCAAGGT
GCCTCGGGACTGA

Translation (260 aa):
MKVELLPALTDNYMYLIIDEDTQEAAIVDPVQPQKVIEAAKKHRVKLTTVLTTHHHWDHAGGNEKLVKLE
PGLKVYGGDDRIGALTHKVTHLSTLQVGSLSVKCLSTPCHTSGHICYFVSKPGSSEPSAVFTGDTLFVAG
CGKFYEGTADEMYKALLEVLGRLPPDTKVYCGHEYTVNNLKFARHVEPGNAAIQEKLAWAKEKYAIGEPT
VPSTLAEEFTYNPFMRVKEKTVQQHAGETDPVTTMRAIRREKDQFKVPRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH