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Report for CCDS50269.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50269.1 Public Mus musculus 18 Dpysl3 23 108 98 CCDS HistoryNCBI Gene:22240Re-query CCDS DB by CCDS ID:50269.1Re-query CCDS DB by GeneID:22240See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50269.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118043.7 ENSMUSP00000113711.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118043.7Link to Ensembl Protein Viewer:ENSMUSP00000113711.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118043Re-query CCDS DB by Protein ID:ENSMUSP00000113711
Original member Current member NCBI NM_001136086.2 NP_001129558.1 Accepted alive Link to Nucleotide Sequence:NM_001136086.2Link to Protein Sequence:NP_001129558.1Re-query CCDS DB by Nucleotide ID:NM_001136086Re-query CCDS DB by Protein ID:NP_001129558Link to BLAST:NP_001129558.1

Chromosomal Locations for CCDS 50269.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 43324332 43324420 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43325725 43325887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43328325 43328504 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43329691 43329861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43332872 43333013 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43333881 43334037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43342242 43342362 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43345106 43345174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43353881 43353961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43354743 43354804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43358234 43358398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43360962 43361146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43363503 43363591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 43373066 43373098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1707 nt):
ATGTATTCACCATCAAGAAACAAAATCCGGCAGAGTGACCGTCTTCTAATCAAGGGAGGGAGAATCGTCA
ATGATGATCAGTCCTTTTATGCTGATATTTACATGGAGGATGGCTTAATAAAGCAAATTGGAGACAATCT
GATTGTCCCCGGAGGTGTGAAGACCATCGAGGCCAACGGGAAGATGGTGATCCCTGGAGGCATTGACGTC
CATACCCACTTCCAGATGCCTTACAAGGGAATGACCACAGTGGACGATTTCTTCCAAGGGACAAAGGCTG
CCTTAGCGGGAGGCACCACCATGATCATTGACCACGTGGTACCTGAACCTGAGTCTAGCCTGACAGAGGC
CTATGAAAAGTGGCGTGAGTGGGCCGATGGGAAGAGCTGCTGTGACTATGCTTTGCATGTGGACATCACC
CACTGGAATGACAGCGTCAAGCAGGAGGTACAGAGCCTCAGCAAGGAAAAAGGCGTTAACTCCTTCATGG
TTTACATGGCCTACAAGGATTTATATCAAGTGTCCAACACAGAGCTCTATGAGATCTTCACCTGCCTGGG
AGAGCTGGGGGCCATTGCTCAAGTTCATGCCGAGAATGGAGATATCATTGCCCAGGAGCAGGCACGGATG
CTGGAAATGGGGATAACCGGCCCAGAAGGCCACGTTCTGAGCAGACCGGAAGAGCTGGAAGCTGAGGCTG
TGTTCCGTGCCATCACCGTCGCCAGCCAGACCAACTGCCCCCTCTATGTCACCAAGGTCATGAGCAAGAG
CGCGGCTGATCTCATCTCACAAGCCAGGAAGAAAGGAAATGTGGTCTTTGGCGAGCCCATCACTGCCAGC
CTGGGAATAGATGGAACTCATTACTGGAGTAAGAACTGGGCCAAAGCAGCTGCGTTTGTGACATCCCCAC
CTCTGAGCCCTGACCCTACCACACCTGACTACATCAACTCCTTGCTGGCCAGCGGGGATCTGCAGCTCTC
TGGAAGTGCCCACTGTACCTTTAGCACTGCCCAGAAAGCCATTGGGAAGGACAACTTCACAGCCATCCCT
GAAGGCACCAATGGCGTGGAGGAGCGTATGTCTGTCATCTGGGACAAGGCTGTGGCCACGGGGAAGATGG
ATGAAAACCAGTTTGTGGCCGTGACAAGCACCAATGCTGCCAAGATATTCAACCTGTACCCTCGAAAGGG
GAGAATAGCTGTGGGCTCTGACAGCGACCTTGTCATCTGGGATCCAGATGCCTTGAAGATTGTCTCTGCC
AAGAACCACCAGTCGGTTGCCGAATACAACATCTTTGAAGGGATGGAGCTGCGTGGTGCACCTCTGGTGG
TTATCTGCCAGGGCAAGATCATGCTGGAAGATGGCAACCTGCACGTGACCCAGGGGGCTGGCCGCTTCAT
TCCCTGCAGCCCATTCTCTGACTATGTCTATAAGCGCATTAAAGCAAGGAGGAAGATGGCAGACCTGCAT
GCAGTCCCAAGAGGCATGTATGATGGACCAGTGTTTGACTTGACCACCACCCCCAAGGGGGGCACCCCAG
CTGGCTCTACTCGGGGCTCTCCCACTCGGCCAAACCCGCCAGTGAGGAACCTCCATCAGTCAGGATTTAG
CCTGTCAGGCACCCAAGTGGATGAGGGTGTCCGCTCAGCTAGCAAACGCATTGTGGCACCCCCTGGAGGC
CGTTCTAACATCACATCCCTGAGTTAA

Translation (568 aa):
MYSPSRNKIRQSDRLLIKGGRIVNDDQSFYADIYMEDGLIKQIGDNLIVPGGVKTIEANGKMVIPGGIDV
HTHFQMPYKGMTTVDDFFQGTKAALAGGTTMIIDHVVPEPESSLTEAYEKWREWADGKSCCDYALHVDIT
HWNDSVKQEVQSLSKEKGVNSFMVYMAYKDLYQVSNTELYEIFTCLGELGAIAQVHAENGDIIAQEQARM
LEMGITGPEGHVLSRPEELEAEAVFRAITVASQTNCPLYVTKVMSKSAADLISQARKKGNVVFGEPITAS
LGIDGTHYWSKNWAKAAAFVTSPPLSPDPTTPDYINSLLASGDLQLSGSAHCTFSTAQKAIGKDNFTAIP
EGTNGVEERMSVIWDKAVATGKMDENQFVAVTSTNAAKIFNLYPRKGRIAVGSDSDLVIWDPDALKIVSA
KNHQSVAEYNIFEGMELRGAPLVVICQGKIMLEDGNLHVTQGAGRFIPCSPFSDYVYKRIKARRKMADLH
AVPRGMYDGPVFDLTTTPKGGTPAGSTRGSPTRPNPPVRNLHQSGFSLSGTQVDEGVRSASKRIVAPPGG
RSNITSLS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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