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Report for CCDS50325.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50325.1 Public Mus musculus 18 St8sia5 23 108 98 CCDS HistoryNCBI Gene:225742Re-query CCDS DB by CCDS ID:50325.1Re-query CCDS DB by GeneID:225742See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50325.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075290.7 ENSMUSP00000074764.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075290.7Link to Ensembl Protein Viewer:ENSMUSP00000074764.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075290Re-query CCDS DB by Protein ID:ENSMUSP00000074764
Original member NCBI NM_013666.2 NP_038694.2 Updated not alive Link to Nucleotide Sequence:NM_013666.2Link to Protein Sequence:NP_038694.2Re-query CCDS DB by Nucleotide ID:NM_013666Re-query CCDS DB by Protein ID:NP_038694
Current member NCBI NM_013666.3 NP_038694.2 Accepted alive Link to Nucleotide Sequence:NM_013666.3Link to Protein Sequence:NP_038694.2Re-query CCDS DB by Nucleotide ID:NM_013666Re-query CCDS DB by Protein ID:NP_038694Link to BLAST:NP_038694.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_038694.2 412 P70126-1 412 100% 0 0

Chromosomal Locations for CCDS 50325.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 18 (NC_000084.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 77186095 77186225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77211656 77211763 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77232793 77232885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77242104 77242190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77246067 77246211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77248437 77248549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77253017 77253109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 77254366 77254834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1239 nt):
ATGCGCTACGCAGACCCCTCCGCCAACAGAGATTTGTTGGGGAATCGAACTTTGCTCTTTATCTTCATCT
GCGCCTTTGCCTTGGTGACCTTGCTTCAGCAGATCCTGTACAGCAAGAGCTACATCAAAAGAGGCTTCCA
GTTTGGTTGGCAGAGGGGCGACCAACAGGCCAATTGGACTGGGCTCTTTAATGACAGCGACAGCCCAACA
GAGCAGAACATCACTGGCTCCAGCTCCAGGTACTTCGAGTTTTACAAGGAGCCTTTAGAGTTTAACTCCA
CGAGATGCCTGGAGCTGAGGCAGGAGATCCTGGAGGTGAAGGTGCTGTCCATGGTGAAGCAGTCTGAACT
CTTCGAAAGGTGGAAGAGTCTCCAGATATGCAAATGGGCAATGGACACCGCGGAAGCCAGCCTCTTCAAG
TCCACCTTGTCCAGGTGCTGCAATGCCCCCAGCTTTCTCTTCACCACCCAGAAGAACACCCCGGTGGAGA
CGAATCTCAGGTATGAGGTGGAATCCAGCGGCTTATATCACATCGACCAGGAGATCTTCAAAATGTTTCC
CAAGGAAATGCCCTACTACCGCTCTCAGTTTAAGAAGTGTGCTGTGGTGGGCAATGGCGGCATCTTGAAG
AACAGCGGCTGCGGGAAGGAGATCAACAGTGCTGACTTTGTCTTCCGGTGCAACCTGCCCCCCATCTCAG
GGATATATACCACAGATGTGGGAGAGAAGACAGATGTAGTCACCGTGAATCCCAGCATCATAATTGACAG
GTTCCACAAGTTGGAGAAGTGGCGGCGGCCTTTCTTCAGCGTGCTGCAGAGGTACGAGAACGCCTCAGTG
CTGCTGCCAGCGTTCTACAACGTCCGCAACACCCTGGTATCCTTCCGAGTCAAATACATGCTGGACGACT
TCCAGTCGCGGCAGCCGGTCTACTTCTTCCACCCGCAGTACCTGAGCAGTGTGTCGCGCTACTGGCTCAG
CCTGGGTGTGCGCGCGCGGCGTATCAGCACCGGCCTCATCCTGGTCACCGCGGCCCTGGAGCTCTGCGAG
GAGGTGCACCTGTTCGGTTTCTGGGCCTTCCCCATGAACCCCTCCGGCTTCTTCATCACGCACCATTACT
ATGACAACGTCAAGCCCAAGCCGGGTTTCCATGCTATGCCCTCGGAGATCTTCACCTTCCTGCGCATGCA
CAGCCGCGGCATCCTTCGCGTGCACACAGGCACCTGCAATTGCTGCTGA

Translation (412 aa):
MRYADPSANRDLLGNRTLLFIFICAFALVTLLQQILYSKSYIKRGFQFGWQRGDQQANWTGLFNDSDSPT
EQNITGSSSRYFEFYKEPLEFNSTRCLELRQEILEVKVLSMVKQSELFERWKSLQICKWAMDTAEASLFK
STLSRCCNAPSFLFTTQKNTPVETNLRYEVESSGLYHIDQEIFKMFPKEMPYYRSQFKKCAVVGNGGILK
NSGCGKEINSADFVFRCNLPPISGIYTTDVGEKTDVVTVNPSIIIDRFHKLEKWRRPFFSVLQRYENASV
LLPAFYNVRNTLVSFRVKYMLDDFQSRQPVYFFHPQYLSSVSRYWLSLGVRARRISTGLILVTAALELCE
EVHLFGFWAFPMNPSGFFITHHYYDNVKPKPGFHAMPSEIFTFLRMHSRGILRVHTGTCNCC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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