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Report for CCDS50424.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50424.1 Public Mus musculus 19 Pank1 23 108 98 CCDS HistoryNCBI Gene:75735Re-query CCDS DB by CCDS ID:50424.1Re-query CCDS DB by GeneID:75735See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50424.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000036584.12 ENSMUSP00000043562.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000036584.12Link to Ensembl Protein Viewer:ENSMUSP00000043562.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000036584Re-query CCDS DB by Protein ID:ENSMUSP00000043562
Original member Current member NCBI NM_001114339.2 NP_001107811.1 Accepted alive Link to Nucleotide Sequence:NM_001114339.2Link to Protein Sequence:NP_001107811.1Re-query CCDS DB by Nucleotide ID:NM_001114339Re-query CCDS DB by Protein ID:NP_001107811Link to BLAST:NP_001107811.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001107811.1 548 Q8K4K6-1 548 100% 0 0

Chromosomal Locations for CCDS 50424.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 34812328 34812387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34813692 34813817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34821100 34821223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34821713 34821889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34827120 34827373 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34840757 34841109 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 34878524 34879076 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1647 nt):
ATGAGGGGGAGGCGGGCTCCCCGGCCGGGGTCCACCGAGGTTCCCGCAGCTGCGCGCGATGCCGACACGC
TGCGGGCGAGAGCAGCAAGCCCGGTGCGCGGGGCCCAGCTCGCCGAAGACGTGGGGACGCCGACGGGAGG
AGGGGAGGAGCGCCGGGGCCACCAGCTCCCGACCGCGGCGCCGAGGCTGCGGGAGAGCAAGCCCCAGGGT
GGATCGGAAGATCGGGGAACGGCCGACCGTGACCTCCAGCGAGGCTGCCAGAGCCGGAGCCCGCGCACCG
CTCCGCCGGTCCCGGGCATGGGCGACCGCGGCGCGCAACACGAGCGCGCGGCCCTGCAGTCCCCGGGGGC
CCCCGAGGGCGCCGCGGCCGCCGTGAACGGGCTGCTGCACAACGGCTTCCACCCGTCGGCCGCCAGCAGC
CGCGACCCGCCGGCCCCACGCTTCCAGCTCCCGTCCGAGCTGCAGCCGCAGCCGCTGTTCGCCCAGCATG
ATTCTCCGGCCAAGAAATGCCGGCTGCGGAGGAGGATGGACTCCGGGAGGAAGAACAGGCCGCCATTCCC
GTGGTTTGGTATGGATATCGGTGGAACCCTGGTTAAGCTGGTTTACTTTGAACCGAAGGATATCACGGCA
GAGGAAGAACAGGAAGAAGTGGAGAACCTGAAGAGCATCCGGAAGTATTTAACTTCTAACACTGCCTACG
GCAAAACTGGGATCCGGGACGTCCATCTGGAACTGAAAAACCTGACCATGTGTGGGCGCAAAGGGAACCT
GCACTTCATCCGCTTCCCGACCTGTGCCATGCACTTGTTCATCCAGATGGGCAGCGAGAAGAACTTCTCC
AGCCTCCACACCACCCTCTGTGCCACGGGAGGTGGGGCTTTCAAGTTTGAGGAGGACTTCCGAATGATTG
CGGACCTGCAGCTGCATAAACTGGATGAGCTGGACTGTTTGATTCAGGGCCTTCTTTACGTTGACTCGGT
TGGCTTCAATGGCAAGCCAGAATGTTACTATTTCGAAAACCCCACAAATCCCGAGTTGTGTCAAAAAAAG
CCATACTGTTTGGATAACCCGTACCCTATGTTGCTGGTTAACATGGGCTCAGGCGTCAGCATCCTGGCAG
TGTACTCCAAGGACAACTACAAAAGAGTGACGGGGACCAGTCTTGGAGGTGGGACATTCCTAGGCCTATG
TTGCTTGCTGACTGGTTGTGAGACCTTTGAAGAAGCTCTGGACATGGCAGCTAAAGGCGACAGCACCAAT
GTGGATAAGCTGGTGAAGGACATTTACGGAGGAGACTATGAGCGATTTGGCCTTCAAGGATCTGCTGTAG
CATCAAGCTTTGGCAACATGATGAGCAAAGAAAAGAGAGAGTCCATCAGCAAAGAAGACCTCGCCCGGGC
CACATTGGTCACCATCACCAACAACATTGGCTCCATTGCTCGGATGTGTGCACTGAATGAGAATATTGAC
AGAGTTGTGTTTGTTGGGAACTTTCTCAGAATCAATATGGTCTCAATGAAGTTGCTAGCATATGCCATGG
ACTTTTGGTCTAAAGGACAGCTGAAAGCACTGTTTTTGGAACATGAGGGTTATTTTGGAGCTGTTGGGGC
CCTGTTGGAACTGTTCAAAATGACCGATACACAGTAG

Translation (548 aa):
MRGRRAPRPGSTEVPAAARDADTLRARAASPVRGAQLAEDVGTPTGGGEERRGHQLPTAAPRLRESKPQG
GSEDRGTADRDLQRGCQSRSPRTAPPVPGMGDRGAQHERAALQSPGAPEGAAAAVNGLLHNGFHPSAASS
RDPPAPRFQLPSELQPQPLFAQHDSPAKKCRLRRRMDSGRKNRPPFPWFGMDIGGTLVKLVYFEPKDITA
EEEQEEVENLKSIRKYLTSNTAYGKTGIRDVHLELKNLTMCGRKGNLHFIRFPTCAMHLFIQMGSEKNFS
SLHTTLCATGGGAFKFEEDFRMIADLQLHKLDELDCLIQGLLYVDSVGFNGKPECYYFENPTNPELCQKK
PYCLDNPYPMLLVNMGSGVSILAVYSKDNYKRVTGTSLGGGTFLGLCCLLTGCETFEEALDMAAKGDSTN
VDKLVKDIYGGDYERFGLQGSAVASSFGNMMSKEKRESISKEDLARATLVTITNNIGSIARMCALNENID
RVVFVGNFLRINMVSMKLLAYAMDFWSKGQLKALFLEHEGYFGAVGALLELFKMTDTQ


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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