NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
The CCDS database will be unavailable on Tuesday, May 21, 2024, starting at 8:00 a.m. EDT for up to 60 minutes.
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS50434.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50434.1 Public Mus musculus 19 Entpd1 23 108 98 CCDS HistoryNCBI Gene:12495Re-query CCDS DB by CCDS ID:50434.1Re-query CCDS DB by GeneID:12495See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50434.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112231.8 ENSMUSP00000107850.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112231.8Link to Ensembl Protein Viewer:ENSMUSP00000107850.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000112231Re-query CCDS DB by Protein ID:ENSMUSP00000107850
Original member Current member NCBI NM_009848.4 NP_033978.1 Accepted alive Link to Nucleotide Sequence:NM_009848.4Link to Protein Sequence:NP_033978.1Re-query CCDS DB by Nucleotide ID:NM_009848Re-query CCDS DB by Protein ID:NP_033978Link to BLAST:NP_033978.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033978.1 510 P55772 510 100% 0 0

Chromosomal Locations for CCDS 50434.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 40659885 40659900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40711163 40711290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40720457 40720574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40723087 40723237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40724925 40725084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40726022 40726258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40727288 40727548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40733667 40733786 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40736750 40736884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 40738823 40739029 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1533 nt):
ATGGAAGATATAAAGGATTCTAAGGTGAAGAGATTTTGCTCCAAAAATATTCTGATCATCCTTGGTTTCA
CCTCTATCTTGGCTGTGATAGCTTTGATTGCTGTGGGACTGACCCAGAACAAACCTTTGCCAGAAAATGT
TAAGTATGGGATTGTGTTGGATGCGGGGTCATCTCACACCAACCTGTACATCTACAAGTGGCCGGCCGAG
AAGGAGAATGACACAGGGGTGGTGCAGCAGTTAGAGGAATGCCAAGTGAAAGGTCCTGGAATCTCAAAAT
ATGCTCAGAAAACAGATGAAATCGGTGCGTACCTGGCCGAATGCATGGAACTGTCCACCGAACTGATACC
AACATCCAAGCATCACCAGACTCCTGTCTACCTGGGAGCCACAGCAGGCATGCGCTTGCTTAGAATGGAA
AGCGAACAATCGGCAGACGAGGTCCTGGCTGCAGTGTCAACAAGCCTTAAGAGCTACCCCTTTGACTTCC
AGGGTGCCAAGATCATCACTGGACAAGAGGAAGGTGCCTATGGGTGGATTACTATTAACTATCTGCTGGG
CAGATTCACTCAGGAACAGAGTTGGCTAAGCCTCATCTCAGACAGTCAGAAACAGGAAACCTTTGGCGCT
TTGGATCTCGGCGGAGCCTCCACACAGATCACCTTCGTGCCCCAAAACAGCACTATAGAGTCCCCAGAAA
ACTCTCTGCAATTCCGTCTCTATGGCGAGGACTATACTGTGTACACACACAGCTTCCTGTGCTATGGGAA
GGATCAGGCTCTCTGGCAGAAACTGGCCAAGGACATTCAGGTTTCAAGTGGTGGCGTCCTTAAGGACCCA
TGCTTTAACCCAGGATACGAGAAGGTTGTGAATGTAAGTGAGCTCTATGGCACTCCCTGCACCAAAAGAT
TCGAAAAGAAGCTACCATTTGATCAGTTTCGAATCCAGGGCACTGGAGACTACGAACAGTGCCACCAGAG
CATCCTTGAGCTCTTCAACAACAGCCACTGCCCTTACTCCCAGTGTGCCTTCAATGGCGTCTTCCTGCCA
CCTCTCCATGGGAGTTTTGGGGCGTTTTCTGCTTTCTACTTTGTGATGGATTTTTTTAAGAAGGTAGCGA
AAAACAGTGTCATCTCTCAGGAGAAAATGACCGAGATAACAAAAAATTTTTGCTCAAAATCTTGGGAAGA
GACAAAGACATCTTATCCTTCAGTAAAGGAGAAGTACCTGAGTGAGTACTGCTTCTCGGGCGCCTACATC
CTCTCTCTCCTGCAAGGCTATAACTTCACAGACAGCTCCTGGGAACAGATTCATTTTATGGGCAAGATCA
AAGACAGCAACGCGGGGTGGACTTTGGGCTACATGCTGAACTTGACCAACATGATCCCAGCTGAACAGCC
GTTGTCCCCGCCTCTCCCTCACTCCACCTACATCGGCCTCATGGTTCTCTTCTCCCTGCTCTTGGTTGCT
GTGGCCATCACAGGCCTGTTCATCTATAGCAAGCCTTCATATTTCTGGAAAGAGGCAGTATAG

Translation (510 aa):
MEDIKDSKVKRFCSKNILIILGFTSILAVIALIAVGLTQNKPLPENVKYGIVLDAGSSHTNLYIYKWPAE
KENDTGVVQQLEECQVKGPGISKYAQKTDEIGAYLAECMELSTELIPTSKHHQTPVYLGATAGMRLLRME
SEQSADEVLAAVSTSLKSYPFDFQGAKIITGQEEGAYGWITINYLLGRFTQEQSWLSLISDSQKQETFGA
LDLGGASTQITFVPQNSTIESPENSLQFRLYGEDYTVYTHSFLCYGKDQALWQKLAKDIQVSSGGVLKDP
CFNPGYEKVVNVSELYGTPCTKRFEKKLPFDQFRIQGTGDYEQCHQSILELFNNSHCPYSQCAFNGVFLP
PLHGSFGAFSAFYFVMDFFKKVAKNSVISQEKMTEITKNFCSKSWEETKTSYPSVKEKYLSEYCFSGAYI
LSLLQGYNFTDSSWEQIHFMGKIKDSNAGWTLGYMLNLTNMIPAEQPLSPPLPHSTYIGLMVLFSLLLVA
VAITGLFIYSKPSYFWKEAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH