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Report for CCDS50643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50643.1 Public Mus musculus 2 Dgkz 23 108 98 CCDS HistoryNCBI Gene:104418Re-query CCDS DB by CCDS ID:50643.1Re-query CCDS DB by GeneID:104418See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111303.1 ENSMUSP00000106934.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111303.1Link to Ensembl Protein Viewer:ENSMUSP00000106934.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111303Re-query CCDS DB by Protein ID:ENSMUSP00000106934
Original member Current member NCBI NM_001166597.1 NP_001160069.1 Accepted alive Link to Nucleotide Sequence:NM_001166597.1Link to Protein Sequence:NP_001160069.1Re-query CCDS DB by Nucleotide ID:NM_001166597Re-query CCDS DB by Protein ID:NP_001160069Link to BLAST:NP_001160069.1

Chromosomal Locations for CCDS 50643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91933409 91933525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91933743 91933842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91934056 91934089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91934166 91934286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91934816 91934859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91935081 91935112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91935822 91935961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91936525 91936565 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91936702 91936771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91936858 91936937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91937054 91937154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91937438 91937637 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91937968 91938079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91938162 91938235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91938329 91938391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91938509 91938564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91938717 91938795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91939324 91939464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91939551 91939664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91939753 91939813 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91939910 91939992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91940248 91940343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91940605 91940676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91940758 91940874 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91940965 91941036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91942290 91942358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91942628 91942684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91944022 91944099 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91944374 91944469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91944761 91944869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91945174 91945916 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3372 nt):
ATGGAGACCTTCTTTAGGAAGCATTTCCAACGAAAGGCACGAGGTCCCGGAGAGAGGCAGCGGCGGTCCA
GTGGCGTGGGGCTGCCCACAGGCAAGGCTCGACGCCGCTCCCCTGCAGGGCAGGCGTCCTCTTCACTGGC
CCAGAGGCGCCGCTCCAGTGCACAGCTCCAGGGCTGTTTTCCCAGCTGCGGGGTGGGCACGAGAGGTGCC
AGCCGCAGGCGATCCAGCACTGCACCCCCTACCTGCAATCCCCGCTTCATGGTGGATGTGGTGCCTACCC
TACAGCCTGTCACAGTTGGGGCCCAGCTTCTGGGTGCACCCCTGCTGTTGGCTGGGCTCACAAGCATGAA
GGAGGAAGAGGAGGAGGAAGGGGTCCAGGAGGGAAATGAGACAGCTGAGGCGACAAGTGATGCTAGGCCA
GGTACCCGGACAACGCCCTTCTCACACCAGGGCACCTGGCCACTGCTTCCCATGCCCCGCTGCCTGCGTC
GAGCCTCCTCCCACCTGCTCCCTGCTGATGTGGAGTGTGGCCATACCCTTTGGGGCCTGCATGGTCACTA
TCGACGCCTCAGCCAGCGGTGGCCCTCAGGCCAGCACCCTGGTCTTGGGGGCCGAAGCCCAAGAGCCTCG
GGCGCTGCAGCATGCCCCATGATACCGGCCCGTGTGCGCCCACTGTCTCGCAGACGCCAGGTAGCTCTAA
GGCGGAAGTCAGCTGGACCCCAGCCCTGGAGCACCCTGCTTATGAAAGCCATCACCAAGTCGGGCCTCCA
GCACCTGGCACCCCCTCCTCCCACGCCCGGGGCCCCGTGCGGTGAATCTGAGGAGCAGATCCAGAGCACT
GTGGACTGGAGTGAGTCAGCAGTGTATGGGGAGCACATCTGGTTTGAGACCAACGTGTCCGGTGACTTCT
GCTATGTCGGGGAGCAGCACTGTGTAGCTAAGATGCTGCCGAAGTCAGCGCCCAGAAAAAAGTGTGCAGC
CTGTAAGATCGTGGTGCATACCCAATGCATTAAGCAGCTGGAAAAGATCAATTTCCGCTGTAAGCCGTCC
TTCCGCGAATCAGGCTCCAGGAATGTCCGTGAGCCAACCTTCGTAAGACACCACTGGGTCCACAGACGAC
GCCAGGATGGCAAGTGTCGGCACTGTGGGAAGGGCTTCCAGCAGAAGTTCACCTTCCACAGCAAGGAGAT
CGTAGCCATCAGCTGCTCCTGGTGCAAACAGGCATACCACAGCAAGGTGTCGTGCTTCATGATGCAACAG
ATTGAGGAACCCTGCTCCCTAGGGGTGCATGCAGCCGTGGTCATCCCACCCACCTGGATCCTGCGGGCCC
GGAGGCCCCAGAACACCCTCAAGGCCAGCAAGAAGAAAAAGAGAGCGTCCTTCAAGAGGAGGTCCAGCAA
GAAAGGACCTGAGGAAGGCCGCTGGAGACCCTTCATCATCAGACCCACCCCATCCCCCCTCATGAAACCC
CTGCTGGTGTTTGTGAACCCCAAGAGTGGGGGCAACCAGGGTGCCAAGATCATCCAGTCTTTTTTGTGGT
ATCTGAATCCCCGACAAGTCTTTGATCTGAGCCAGGGAGGACCCAGGGAAGCGCTGGAAATGTACCGCAA
AGTACATAATTTGAGGATTCTGGCTTGCGGGGGTGATGGCACGGTTGGCTGGATTCTCTCCACCCTGGAC
CAGCTGCGCTTAAAACCACCGCCTCCTGTAGCCATCCTGCCTCTGGGCACTGGCAATGACCTGGCCCGAA
CCCTCAACTGGGGTGGGGGTTACACAGATGAGCCTGTGTCAAAGATCCTTTCCCATGTTGAGGAGGGGAA
TGTGGTACAGCTGGACCGTTGGGACCTCCGAGCAGAGCCCAACCCTGAGGCGGGGCCTGAGGAGCGAGAT
GATGGAGCCACTGACCGGCTGCCCCTGGATGTCTTTAACAACTACTTCAGCCTGGGCTTCGATGCCCACG
TCACCCTGGAATTTCATGAGTCTCGAGAAGCCAACCCAGAGAAGTTCAACAGCCGCTTTCGGAATAAGAT
GTTCTATGCTGGGACGGCCTTCTCTGACTTCCTGATGGGCAGCTCCAAGGACTTAGCCAAGCACATCCGA
GTAGTGTGTGACGGAATGGACCTAACCCCCAAGATTCAGGACCTGAAACCGCAGTGCATCGTCTTTCTGA
ATATCCCCAGGTACTGTGCAGGCACCATGCCCTGGGGCCACCCCGGGGAGCACCATGACTTCGAGCCCCA
GAGGCATGATGATGGCTACCTGGAGGTCATCGGCTTCACCATGACATCCTTGGCAGCACTGCAGGTGGGT
GGGCACGGCGAGCGATTGACGCAGTGCCGAGAAGTGCTGCTCACCACTGCCAAGGCCATCCCTGTGCAGG
TGGACGGTGAGCCCTGCAAGCTTTCAGCATCACGGATTCGAATTGCCCTGCGCAACCAGGCCACTATGGT
GCAGAAGGCCAAGCGCCGGAGTACTGCCCCACTGCACAGCGACCAGCAGCCAGTTCCTGAGCAGCTGAGG
ATCCAGGTGAGCAGGGTCAGTATGCACGACTACGAGGCTCTACATTATGACAAGGAGCAGCTCAAGGAAG
CCTCTGTGCCTCTGGGCACTGTGGTGGTCCCCGGAGACAGTGACCTGGAGCTCTGCCGCGCCCACATTGA
GAGACTGCAGCGGGAGCCCGATGGGGCTGGAGCCAAGTCCCCGATGTGCCACCAACTCTCCTCCAAGTGG
TGTTTCCTGGATGCCACCACTGCCAGCCGCTTCTACAGGATCGACAGAGCCCAGGAGCACCTCAACTATG
TGACGGAGATTGCCCAGGACGAGATTTACATCCTAGACCCAGAGCTTCTGGGAGCATCAGCCCGGCCTGA
CCTCCCCACCCCTACCTCCCCACTCCCTGCTTCCCCCTGCTCCCCTACACCCGGGTCAATGCAGGGGGAC
ACTGCACTGCCCCAAGGTGAAGAACTGATTGAAGCAGCCAAGAGGAATGACTGCTGCAAGCTCCAGGAGC
TACACCGAGCAGGAGGTGACCTCATGCACCGTGACCAGAAGAGCCGCACGCTCTTGCACCACGCGGTCAG
CACTGGCAGTAAGGAAGTGGTCCGCTATCTGCTGGATCATGCACCTCCAGAGATCCTTGATGCTGTGGAG
GAGAATGGGGAGACCTGTCTACACCAGGCAGCCGCCCTGGGTCAGCGCACCATCTGCCACTACATTGTGG
AAGCCGGGGCCTCCCTCATGAAGACAGATCTGCAGGGCGACACTCCCCGGCAGCGCGCTGAGAAGGCTCA
AGACACAGAGCTCGCTGCCTACCTGGAGAACAGACAGCATTACCAGATGATCCAGCGTGAGGACCAGGAG
ACAGCTGTGTAG

Translation (1123 aa):
METFFRKHFQRKARGPGERQRRSSGVGLPTGKARRRSPAGQASSSLAQRRRSSAQLQGCFPSCGVGTRGA
SRRRSSTAPPTCNPRFMVDVVPTLQPVTVGAQLLGAPLLLAGLTSMKEEEEEEGVQEGNETAEATSDARP
GTRTTPFSHQGTWPLLPMPRCLRRASSHLLPADVECGHTLWGLHGHYRRLSQRWPSGQHPGLGGRSPRAS
GAAACPMIPARVRPLSRRRQVALRRKSAGPQPWSTLLMKAITKSGLQHLAPPPPTPGAPCGESEEQIQST
VDWSESAVYGEHIWFETNVSGDFCYVGEQHCVAKMLPKSAPRKKCAACKIVVHTQCIKQLEKINFRCKPS
FRESGSRNVREPTFVRHHWVHRRRQDGKCRHCGKGFQQKFTFHSKEIVAISCSWCKQAYHSKVSCFMMQQ
IEEPCSLGVHAAVVIPPTWILRARRPQNTLKASKKKKRASFKRRSSKKGPEEGRWRPFIIRPTPSPLMKP
LLVFVNPKSGGNQGAKIIQSFLWYLNPRQVFDLSQGGPREALEMYRKVHNLRILACGGDGTVGWILSTLD
QLRLKPPPPVAILPLGTGNDLARTLNWGGGYTDEPVSKILSHVEEGNVVQLDRWDLRAEPNPEAGPEERD
DGATDRLPLDVFNNYFSLGFDAHVTLEFHESREANPEKFNSRFRNKMFYAGTAFSDFLMGSSKDLAKHIR
VVCDGMDLTPKIQDLKPQCIVFLNIPRYCAGTMPWGHPGEHHDFEPQRHDDGYLEVIGFTMTSLAALQVG
GHGERLTQCREVLLTTAKAIPVQVDGEPCKLSASRIRIALRNQATMVQKAKRRSTAPLHSDQQPVPEQLR
IQVSRVSMHDYEALHYDKEQLKEASVPLGTVVVPGDSDLELCRAHIERLQREPDGAGAKSPMCHQLSSKW
CFLDATTASRFYRIDRAQEHLNYVTEIAQDEIYILDPELLGASARPDLPTPTSPLPASPCSPTPGSMQGD
TALPQGEELIEAAKRNDCCKLQELHRAGGDLMHRDQKSRTLLHHAVSTGSKEVVRYLLDHAPPEILDAVE
ENGETCLHQAAALGQRTICHYIVEAGASLMKTDLQGDTPRQRAEKAQDTELAAYLENRQHYQMIQREDQE
TAV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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