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Report for CCDS50695.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50695.1 Public Mus musculus 2 Dut 23 108 98 CCDS HistoryNCBI Gene:110074Re-query CCDS DB by CCDS ID:50695.1Re-query CCDS DB by GeneID:110074See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50695.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000082122.13 ENSMUSP00000080767.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000082122.13Link to Ensembl Protein Viewer:ENSMUSP00000080767.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000082122Re-query CCDS DB by Protein ID:ENSMUSP00000080767
Original member Current member NCBI NM_001159646.1 NP_001153118.1 Accepted alive Link to Nucleotide Sequence:NM_001159646.1Link to Protein Sequence:NP_001153118.1Re-query CCDS DB by Nucleotide ID:NM_001159646Re-query CCDS DB by Protein ID:NP_001153118Link to BLAST:NP_001153118.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001153118.1 200 Q9CQ43-2 200 100% 0 0

Chromosomal Locations for CCDS 50695.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125247272 125247401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125247764 125247896 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125249166 125249257 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125250973 125251017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125256849 125256923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125257070 125257140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125257357 125257413 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (603 nt):
ATGCCTCTCCTAAGCGTGCTGCTGCGCGCCCGCCTGCAGGCCGCTCTGCTCCGCGGGCGTGCGCTCGGGT
CGGCGCGGAGCCGGAGCTGCCGAGGAAGCCGAGGAGCTCCGGCCGGGAGCGCGCGCGCTGATGCCGCGGC
CGTCTCTGCCTCCAAGAGGGCTCGAGCGGAGGATGGCGCTTCTCTGCGCTTCGTGCGGCTCTCGGAGCAC
GCCACGGCGCCCACCCGCGGGTCCGCGCGCGCTGCCGGCTACGACCTATTCAGTGCCTATGATTATACAA
TATCACCCATGGAGAAAGCCATCGTGAAGACAGACATTCAGATAGCTGTCCCTTCTGGGTGCTATGGAAG
AGTAGCTCCACGTTCTGGCTTGGCTGTAAAGCACTTCATAGATGTAGGAGCTGGTGTCATAGACGAGGAT
TACAGAGGAAACGTTGGGGTCGTGCTGTTTAACTTTGGGAAAGAGAAGTTTGAAGTGAAAAAAGGTGATC
GGATTGCGCAGCTCATCTGTGAGCGGATTTCTTATCCAGACTTAGAGGAAGTGCAGACCCTGGATGACAC
CGAGAGAGGCTCAGGAGGCTTCGGCTCCACCGGGAAGAATTAG

Translation (200 aa):
MPLLSVLLRARLQAALLRGRALGSARSRSCRGSRGAPAGSARADAAAVSASKRARAEDGASLRFVRLSEH
ATAPTRGSARAAGYDLFSAYDYTISPMEKAIVKTDIQIAVPSGCYGRVAPRSGLAVKHFIDVGAGVIDED
YRGNVGVVLFNFGKEKFEVKKGDRIAQLICERISYPDLEEVQTLDDTERGSGGFGSTGKN


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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