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Report for CCDS50918.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50918.1 Public Mus musculus 3 Plch1 23 108 98 CCDS HistoryNCBI Gene:269437Re-query CCDS DB by CCDS ID:50918.1Re-query CCDS DB by GeneID:269437See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50918.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000159676.8 ENSMUSP00000124632.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000159676.8Link to Ensembl Protein Viewer:ENSMUSP00000124632.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000159676Re-query CCDS DB by Protein ID:ENSMUSP00000124632
Original member Current member NCBI NM_001177733.2 NP_001171204.1 Accepted alive Link to Nucleotide Sequence:NM_001177733.2Link to Protein Sequence:NP_001171204.1Re-query CCDS DB by Nucleotide ID:NM_001177733Re-query CCDS DB by Protein ID:NP_001171204Link to BLAST:NP_001171204.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001171204.1 1073 Q4KWH5-3 1073 100% 0 0

Chromosomal Locations for CCDS 50918.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 63699283 63699480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63699780 63699802 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63701784 63702138 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63702564 63702623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63704134 63704213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63704517 63704663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63707717 63707801 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63709521 63709645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63710964 63711071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63711168 63711347 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63715984 63716081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63719188 63719282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63721173 63721244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63722750 63722911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63731617 63731724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63740623 63740794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63744479 63744599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63753128 63753331 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63755252 63755345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63767457 63767627 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63773641 63773770 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63781312 63781555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63783991 63784137 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 63850949 63850991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3222 nt):
ATGGCAGACCTTGAAGTGTATAAAAACTTAAGTCCAGAAAAAGTTGAAAGATGCATGAGTGTAATGCAGT
CCGGGACACAGATGATCAAACTGAAGCGTGGCACCAAAGGGCTCGTTCGCCTCTTTTACCTGGATGAGCA
CCGGACCCGCCTCCGATGGCGACCCTCTCGGAAGAGTGAGAAGGCAAAAATACTTATTGACTCCATCTAC
AAAGTCACCGAGGGCAGGCAGTCTGAAATATTCCACAGACAGGCTGAGGGGAACTTTGACCCTAGCTGCT
GCTTTACCATCTACCATGGCAACCACATGGAGTCTCTGGACCTCATTACCTCCAACCCAGAGGAGGCACG
CACCTGGATCACGGGCCTCAAGTATCTGATGGCTGGCATCAGTGATGAAGACTCCCTTGCCAAGAGGCAG
AGGACCCATGACCAATGGGTGAAGCAGACCTTTGAGGAAGCTGATAAGAACGGTGATGGCTTATTGAATA
TTGAAGAGATTCACCAGCTGATGCATAAACTAAATGTCAATCTGCCCCGCAGAAAAGTCAGGCAAATGTT
TCAGGAAGCAGATACAGATGAGAATCAGGGAACCTTGACATTTGAAGAGTTCTGCGTTTTTTACAAAATG
ATGTCATTGAGACGAGACCTCTATTTGCTGCTCTTGAGCTACAGTGACAAGAAAGACCACCTGACTGTGG
AGGAGCTGGCTCAGTTTTTGAAAGTGGAACAAAAGATGAGTAATGTGACACTGGACTATTGTCTTGACAT
CATAATGAAGTTTGAAGTTTCTGAAGAAAACAAAGTGAAAAACGTCCTTGGTATAGAAGGCTTCACGAAC
TTCATGCGTAGCCCTGCCTGTGACGTATTTAACCCGTTGCACCATGAAGTGTACCAAGACATGGATCAGC
CCCTGTGCAACTACTACATTGCTTCATCTCACAACACATACCTGACTGGGGATCAGCTCCTTTCTCAATC
TAAAGTGGATATGTATGCACGGGTGCTACAAGAGGGTTGTAGATGCGTGGAAGTTGACTGTTGGGATGGC
CCAGATGGAGAGCCAGTGGTCCACCATGGTTATACTCTCACTTCAAAAATTCTCTTCAGAGATGTTGTGG
AGACCATCAACAAGCATGCATTCGTGAAGAATGAGTTCCCGGTTATCCTGTCCATTGAGAACCACTGCAG
CATTCAGCAGCAGAGGAAGATTGCTCAGTACCTGAAAGGTATATTGCAGGACAAACTGGACCTGTCTTCT
GTAGACACCGGAGAGTGCAGGCAGCTTCCAAGCCCTCAGAGTCTGAAAGGCAAAATCCTAGTGAAGGGCA
AGAAGTTGCCGTATCACCTTGGGGATGATGCAGAGGAAGGAGAAGTGTCCGATGAGGACAGTGCAGATGA
GATTGAAGATGAGTGCAAGTTCAAGCTGCATTACAGTAACGGGACCACTGAGCACCAGGTAGAATCTTTC
ATACGGAAAAAGCTGGAGTCACTGTTGAAGGAGTCTCAGATTCGAGACAAAGAAGATCCAGACAGTTTCA
CAGTGAGGGCGTTACTCAAGGCTACACATGAAGGCTTAAATGCACACCTGAAGCAGAACCTGGATGTAAA
GGAAAGTGGAAAGAAGTCCCATGGGCGATCCCTGATGGCCAACTTTGGGAAACACAAGCAGAAAGCTACG
AAATCACGTTCTAAATCCTATAGTACTGATGATGAGGATGATAGCCTTCAGAATCCTGGCAAGGAGGGAG
GCCAGCTGTACAGGCTGGGCCGCCGAAGGAGAACCATGAAACTCTGCAGAGAGCTCTCGGACTTGGTGGT
GTACACAAACTCCGTGGCAGCCCAGGATATTGTTGATGATGGAACCACAGGGAATGTGTTGTCCTTCAGC
GAAACAAGAGCCCATCAAGTGGTTCAGCAGAAGTCAGAGCAGTTCATGATCTACAACCAAAAACAGCTCA
CAAGGATTTACCCCTCTGCCTACCGCATCGATTCCAGTAACTTCAACCCACTGCCCTACTGGAATGCAGG
CTGCCAGCTCGTGGCTCTGAACTACCAGTCTGAAGGGCGAATGATGCAGATCAATCGAGCAAAATTCAAG
GCGAATGGCAACTGTGGCTATATTCTCAAGCCCCAGCAAATGTGCAAAGGTACTTTCAACCCTTTCTCTG
GTGACCCACTTCCTGCCAACCCCAAAAAACAGCTCATACTGAAAGTGATCAGTGGACAGCAACTCCCCAA
ACCTCCTGACTCTATGTTTGGAGACCGAGGCGAGATCATTGACCCTTTCGTTGAAGTTGAAATTATTGGG
CTGCCAGTAGACTGTTGCAAGGACCAAACTCGTGTGGTGGATGACAACGGATTTAACCCTGTGTGGGAAG
AAACCCTAACTTTTACAGTTCACATGCCAGAAATAGCTTTGGTTCGGTTCCTTGTGTGGGATCATGATCC
TATTGGAAGAGACTTTGTCGGACAAAGGACTGTGACCTTCAGTAGCCTCGTGCCCGGCTACCGGCATGTC
TACCTGGAAGGACTCACAGAAGCATCTATTTTCGTTCACATAACCATCAATGAGATCTTTGGAAAGTGGA
GTCCTTTAATCCTCAACCCCAGTTATACCATATTGCACTTTCTAGGAGCTACAAAGAACAGACAGCTCCA
AGGCCTGAAGGGGCTGTTCAATAAGAATCCCAGGCACGCTTCTTCAGAAAACAACTCGCATTATGTTCGG
AAGCGATCGATTGGAGATAGGATTCTGCGACGTACAGCTAGTGCTCCAGCCAAAGGCAGGAAAAAGAGCA
AAGTGGGCTTCCAAGAAATGGTTGAGATAAAAGATTCTGTCTCTGAGGCTTCAAGAGATCAAGATGGTGT
CCTGAGGAGGACCACCCGGAGTCTGCAAGTACGCCCTGTCTCTATGCCTGTTGACAAGAGCCTTCTGGGG
GCTTTGTCGCTGCCCATATCTGAAGCAGCAAAAGACACGGATGGAAAAGAAAACTGTCTGGATCTGAATA
GGAAGCAGCGCAAGCAGGAGACAAGGATGACAGAAGAAAGGGAGCCGCAACTAGAAAAGACCCACATTTT
TCAAATTTCAACAAAAAGTTATCCTCCTCCTCCAGTGCGCTCCTCCACAAAGATGCCAACCAAGGGCCAA
CTGCCAGTGTATCAAACCCAGAACAGTGTGGAGGACGAGGTGCAAAGAGTGAGAGGATCAAACCAAATAT
GA

Translation (1073 aa):
MADLEVYKNLSPEKVERCMSVMQSGTQMIKLKRGTKGLVRLFYLDEHRTRLRWRPSRKSEKAKILIDSIY
KVTEGRQSEIFHRQAEGNFDPSCCFTIYHGNHMESLDLITSNPEEARTWITGLKYLMAGISDEDSLAKRQ
RTHDQWVKQTFEEADKNGDGLLNIEEIHQLMHKLNVNLPRRKVRQMFQEADTDENQGTLTFEEFCVFYKM
MSLRRDLYLLLLSYSDKKDHLTVEELAQFLKVEQKMSNVTLDYCLDIIMKFEVSEENKVKNVLGIEGFTN
FMRSPACDVFNPLHHEVYQDMDQPLCNYYIASSHNTYLTGDQLLSQSKVDMYARVLQEGCRCVEVDCWDG
PDGEPVVHHGYTLTSKILFRDVVETINKHAFVKNEFPVILSIENHCSIQQQRKIAQYLKGILQDKLDLSS
VDTGECRQLPSPQSLKGKILVKGKKLPYHLGDDAEEGEVSDEDSADEIEDECKFKLHYSNGTTEHQVESF
IRKKLESLLKESQIRDKEDPDSFTVRALLKATHEGLNAHLKQNLDVKESGKKSHGRSLMANFGKHKQKAT
KSRSKSYSTDDEDDSLQNPGKEGGQLYRLGRRRRTMKLCRELSDLVVYTNSVAAQDIVDDGTTGNVLSFS
ETRAHQVVQQKSEQFMIYNQKQLTRIYPSAYRIDSSNFNPLPYWNAGCQLVALNYQSEGRMMQINRAKFK
ANGNCGYILKPQQMCKGTFNPFSGDPLPANPKKQLILKVISGQQLPKPPDSMFGDRGEIIDPFVEVEIIG
LPVDCCKDQTRVVDDNGFNPVWEETLTFTVHMPEIALVRFLVWDHDPIGRDFVGQRTVTFSSLVPGYRHV
YLEGLTEASIFVHITINEIFGKWSPLILNPSYTILHFLGATKNRQLQGLKGLFNKNPRHASSENNSHYVR
KRSIGDRILRRTASAPAKGRKKSKVGFQEMVEIKDSVSEASRDQDGVLRRTTRSLQVRPVSMPVDKSLLG
ALSLPISEAAKDTDGKENCLDLNRKQRKQETRMTEEREPQLEKTHIFQISTKSYPPPPVRSSTKMPTKGQ
LPVYQTQNSVEDEVQRVRGSNQI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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