NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS51054.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51054.1 Public Mus musculus 3 Amy2a4 23 108 98 CCDS HistoryNCBI Gene:100043684Re-query CCDS DB by CCDS ID:51054.1Re-query CCDS DB by GeneID:100043684See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 51054.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000179568.2 ENSMUSP00000137025.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000179568.2Link to Ensembl Protein Viewer:ENSMUSP00000137025.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000179568Re-query CCDS DB by Protein ID:ENSMUSP00000137025
Original member Current member NCBI NM_001160150.1 NP_001153622.1 Accepted alive Link to Nucleotide Sequence:NM_001160150.1Link to Protein Sequence:NP_001153622.1Re-query CCDS DB by Nucleotide ID:NM_001160150Re-query CCDS DB by Protein ID:NP_001153622Link to BLAST:NP_001153622.1

Chromosomal Locations for CCDS 51054.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 113281878 113282067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113284114 113284239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113284348 113284466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113285630 113285729 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113285822 113285944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113286622 113286755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113288422 113288652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113289385 113289573 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113290650 113290796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 113291127 113291294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1527 nt):
ATGAAGTTCGTTCTGCTGCTTTCCCTCATTGGGTTCTGCTGGGCTCAATATGACCCACATACTTCAGATG
GGAGGACTGCTATTGTCCACCTGTTCGAGTGGCGCTGGGTTGATATTGCCAAGGAATGTGAGCGATACTT
AGCTCCTAAGGGATTTGGAGGGGTGCAGGTCTCTCCACCCAATGAAAACGTTGTAGTTCATAACCCATCA
AGACCTTGGTGGGAAAGATACCAACCAATCAGCTATAAAATCTGCACAAGGTCTGGAAATGAAGATGAAT
TCAGAGACATGGTGACAAGGTGCAACAATGTTGGTGTCCGTATTTATGTGGATGCTGTCATTAACCACAT
GTGTGGCGCAGGCAATCCTGCAGGAACAAGCAGTACCTGTGGAAGTTACCTCAATCCAAATAACAGGGAA
TTCCCAGCAGTTCCATACTCTGCTTGGGACTTTAACGATAATAAATGTAATGGAGAAATTGATAACTACA
ATGATGCTTATCAGGTCAGAAATTGTCGTCTGACTGGCCTTCTGGATCTTGCACTTGAGAAAGATTATGT
TCGTACCAAGGTGGCTGACTATATGAACCATCTCATTGACATTGGAGTAGCAGGGTTCAGACTTGATGCT
GCTAAGCACATGTGGCCTGGAGACATAAAGGCAGTTTTGGACAAACTGCATAATCTCAATACAAAATGGT
TCTCCCAAGGAAGCAGACCTTTCATTTTCCAAGAGGTCATTGATCTGGGTGGTGAGGCAATTAAAGGTAG
TGAGTACTTTGGAAATGGCCGTGTGACAGAATTCAAGTATGGTGCAAAACTTGGCACAGTTATCCGCAAG
TGGAATGGCGAGAAGATGTCCTATTTAAAGAACTGGGGAGAAGGTTGGGGTTTGGTGCCTTCTGACAGAG
CCCTTGTGTTTGTGGACAACCATGATAATCAGCGAGGACATGGTGCTGGAGGATCATCCATCCTGACATT
CTGGGATGCTAGAATGTATAAAATGGCTGTCGGATTTATGTTGGCTCATCCTTATGGATTCACAAGAGTA
ATGTCAAGTTACCGTTGGAATAGAAATTTCCAGAATGGAAAAGATCAGAATGACTGGATTGGACCACCCA
ATAACAATGGAGTAACAAAAGAAGTGACCATTAATGCAGACACTACTTGTGGCAATGACTGGGTCTGTGA
ACACAGATGGCGTCAAATCAGGAACATGGTTGCCTTCAGGAATGTGGTCAATGGTCAGCCTTTTTCAAAC
TGGTGGGATAATAACAGCAACCAAGTAGCTTTTAGCAGAGGAAACAGAGGATTCATTGTCTTTAACAATG
ATGACTGGGCTTTGTCAGCCACTTTACAGACTGGTCTTCCTGCTGGCACATACTGTGATGTCATCTCTGG
AGATAAGGTCGATGGCAATTGCACTGGACTTAGAGTGAATGTTGGCAGTGATGGCAAAGCTCACTTTTCC
ATTAGTAACTCTGCTGAGGACCCATTTATTGCAATCCATGCTGACTCAAAATTGTAA

Translation (508 aa):
MKFVLLLSLIGFCWAQYDPHTSDGRTAIVHLFEWRWVDIAKECERYLAPKGFGGVQVSPPNENVVVHNPS
RPWWERYQPISYKICTRSGNEDEFRDMVTRCNNVGVRIYVDAVINHMCGAGNPAGTSSTCGSYLNPNNRE
FPAVPYSAWDFNDNKCNGEIDNYNDAYQVRNCRLTGLLDLALEKDYVRTKVADYMNHLIDIGVAGFRLDA
AKHMWPGDIKAVLDKLHNLNTKWFSQGSRPFIFQEVIDLGGEAIKGSEYFGNGRVTEFKYGAKLGTVIRK
WNGEKMSYLKNWGEGWGLVPSDRALVFVDNHDNQRGHGAGGSSILTFWDARMYKMAVGFMLAHPYGFTRV
MSSYRWNRNFQNGKDQNDWIGPPNNNGVTKEVTINADTTCGNDWVCEHRWRQIRNMVAFRNVVNGQPFSN
WWDNNSNQVAFSRGNRGFIVFNNDDWALSATLQTGLPAGTYCDVISGDKVDGNCTGLRVNVGSDGKAHFS
ISNSAEDPFIAIHADSKL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH