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Report for CCDS51101.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51101.1 Public Mus musculus 3 Cth 23 108 98 CCDS HistoryNCBI Gene:107869Re-query CCDS DB by CCDS ID:51101.1Re-query CCDS DB by GeneID:107869See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51101.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000118539.1 ENSMUSP00000113672.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000118539.1Link to Ensembl Protein Viewer:ENSMUSP00000113672.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000118539Re-query CCDS DB by Protein ID:ENSMUSP00000113672
Original member Current member NCBI NM_145953.2 NP_666065.1 Accepted alive Link to Nucleotide Sequence:NM_145953.2Link to Protein Sequence:NP_666065.1Re-query CCDS DB by Nucleotide ID:NM_145953Re-query CCDS DB by Protein ID:NP_666065Link to BLAST:NP_666065.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666065.1 398 Q8VCN5 398 100% 0 0

Chromosomal Locations for CCDS 51101.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 3 (NC_000069.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 157894819 157894827 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157897192 157897330 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157905145 157905197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157906183 157906304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157907320 157907472 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157908899 157908976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157910883 157910940 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157913600 157913731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157918426 157918535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157920017 157920112 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157920955 157921036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 157924866 157925030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1197 nt):
ATGCAGAAGGACGCCTCTTTGAGCGGCTTCCTGCCTAGTTTCCAGCATTTCGCCACTCAGGCCATCCACG
TGGGACAAGAGCCTGAGCAATGGAATTCTCGTGCCGTGGTGCTGCCCATTTCGTTGGCCACCACATTTAA
GCAGGACTTCCCGGGCCAGTCCTCGGGTTTTGAATACAGCCGCTCTGGAAATCCAACAAGGAATTGCTTG
GAAAAAGCAGTGGCTGCGTTGGATGGGGCAAAGCACAGTTTGGCCTTTGCATCGGGTCTTGCTGCCACCA
TTACGATTACCCATCTTTTAAAAGCAGGAGATGAAATCATTTGCATGGATGAAGTGTATGGAGGCACCAA
CAGGTACTTCAGGAGGGTGGCATCTGAATTTGGACTGAAGATTTCTTTTGTAGATTGTTCCAAAACCAAA
TTGCTAGAGGCAGCGATTACACCACAAACCAAGCTTGTTTGGATCGAAACACCCACAAACCCAACTTTGA
AGTTGGCTGACATTGGAGCCTGCGCACAAATTGTCCACAAACGTGGAGACATCATTTTGGTTGTAGATAA
CACCTTCATGTCTGCATATTTCCAGAGACCTTTGGCTCTGGGTGCTGATATTTGTATGTGTTCTGCCACA
AAATACATGAATGGCCACAGCGATGTTGTCATGGGTTTAGTGTCTGTTAATTCTGATGACCTCAATAGTC
GGCTTCGTTTCCTGCAGAATTCACTAGGAGCAGTTCCTTCTCCTTTTGATTGTTACCTCTGCTGCCGAGG
CCTGAAGACACTGCAGGTCCGGATGGAGAAACATTTCAAGAATGGGATGGCGGTGGCTCGTTTCCTGGAG
ACCAATCCCCGGGTAGAAAAGGTTGTTTATCCTGGGCTACCCTCTCACCCTCAGCATGAGCTGGCCAAAC
GCCAGTGCTCGGGCTGCCCAGGGATGGTCAGTTTCTACATCAAGGGTGCTCTGCAGCATGCTAAGGCCTT
CCTCAAAAATCTAAAGCTGTTTACTCTGGCAGAGAGCCTGGGAGGATATGAGAGTCTGGCTGAGCTTCCA
GCAATCATGACCCATGCCTCTGTGCCTGAGAAGGACAGAGCTACCCTCGGGATCAATGACACACTGATAC
GACTTTCTGTGGGCCTAGAGGATGAACAGGACCTTCTTGAAGACCTGGATCGAGCTTTGAAGGCAGCGCA
CCCTTAA

Translation (398 aa):
MQKDASLSGFLPSFQHFATQAIHVGQEPEQWNSRAVVLPISLATTFKQDFPGQSSGFEYSRSGNPTRNCL
EKAVAALDGAKHSLAFASGLAATITITHLLKAGDEIICMDEVYGGTNRYFRRVASEFGLKISFVDCSKTK
LLEAAITPQTKLVWIETPTNPTLKLADIGACAQIVHKRGDIILVVDNTFMSAYFQRPLALGADICMCSAT
KYMNGHSDVVMGLVSVNSDDLNSRLRFLQNSLGAVPSPFDCYLCCRGLKTLQVRMEKHFKNGMAVARFLE
TNPRVEKVVYPGLPSHPQHELAKRQCSGCPGMVSFYIKGALQHAKAFLKNLKLFTLAESLGGYESLAELP
AIMTHASVPEKDRATLGINDTLIRLSVGLEDEQDLLEDLDRALKAAHP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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