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Report for CCDS51643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
51643.1 Public Mus musculus 5 Acad10 23 108 98 CCDS HistoryNCBI Gene:71985Re-query CCDS DB by CCDS ID:51643.1Re-query CCDS DB by GeneID:71985See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 51643.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031412.11 ENSMUSP00000031412.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031412.11Link to Ensembl Protein Viewer:ENSMUSP00000031412.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031412Re-query CCDS DB by Protein ID:ENSMUSP00000031412
Original member Current member EBI ENSMUST00000111770.1 ENSMUSP00000107400.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111770.1Link to Ensembl Protein Viewer:ENSMUSP00000107400.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111770Re-query CCDS DB by Protein ID:ENSMUSP00000107400
Original member Current member NCBI NM_028037.4 NP_082313.2 Accepted alive Link to Nucleotide Sequence:NM_028037.4Link to Protein Sequence:NP_082313.2Re-query CCDS DB by Nucleotide ID:NM_028037Re-query CCDS DB by Protein ID:NP_082313Link to BLAST:NP_082313.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082313.2 1069 Q8K370 1069 100% 0 0

Chromosomal Locations for CCDS 51643.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 121621209 121621379 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121621990 121622067 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121622679 121622822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121626048 121626220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121627265 121627423 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121629901 121629991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121630098 121630235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121630645 121630785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121631277 121631677 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121632489 121632662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121634677 121634822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121637244 121637394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121639124 121639305 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121642612 121642680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121645369 121645510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121646702 121646861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121647835 121647993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121649354 121649548 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121651956 121652104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 121656014 121656200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3210 nt):
ATGTTGGTAAGAAGACTTTTCCAGCCTTCCACTCTGCACTGGGCATGGAGGACCACGGCCCTGAACCATC
CCCTGGGCAGGCATCAGGGAGGCCTCCGCTGGACACATTCTGGAGGCCGAAGCTACAGAGCAGTCATTTT
TGACACGGGCGGAGTTCTCGTGCCTTCTCCAGGGACAGTGGCTGTGGGCTGGGAGGTGCAGAATCATGTC
CCTTCTGGAACTATAGTGAAGGCTTTCATCAGAGGTGGCGACAGTGGGCCCTGGATAAGGTTTATAAAAG
GAGAGATAACGACCGAGCACTTCTTGGAAGAATTCGGGAGACTGTGCTCTGAAATCGCAAAGACTTCCGT
GCCCGTGAGCTCCTATTTCTCTCTGCTGACCAGTGAGCAGGTGACAAAGCAGTTCCCGGTGATGACTCAG
GCCATCTCTCAGATCAGAGCAAAAGGCCTCCAGACTGCAGTCCTCACCAACAACTTTCATCTTTCCAGCG
GGGAAAGCTTCCTGCCCCTGGACCGGAAACAGTTTGATGTGGTGGTTGAGTCCTGCCTGGAAGGCATCTG
TAAGCCAGATCCCAGGATATTCCAGCTGTGCCTGCAGAGGCTGAGCCTGCAGCCCTCAGAGGCTATTTTT
CTTGATGATCTGGGATCCAATCTAAAAGTGGCTGCCAGCCTGGGCATTCACACCATCAAGGTTGACAGGC
CCGAGACAGCAGTGAAGGAGCTGGAGGCTCTACTGGGTTTCCCACTGCACTTGGGCGTTCCCAACACCCG
GCCTGTGAGGAAGACCATGGCGATTCCACAAGATGCCTTGGAGAAGTACCTGAAGGGCTTGCTGGGGACC
CACTCCACCGGCCCCATGGAGCTCCTTCAGTTTGATCATGGACAGTCAAACCCAACGTACTACATCAGGC
TGGCTGACCGTCAGCTGGTCCTGAGGAAGAAACCCTCGGGGACCCTCCTCCCCTCTGCCCATGCCATAGA
AAGGGAATTCAGGATCATGAAAGCCCTTGCAAATGCAGGAGTCCCTGTCCCTACTGTTCTTGACCTCTGT
GAAGACTCAAGCATCATCGGCACCCCCTTCTACTTGATGGAGTACTGCCCGGGCATCATCTACAAAGACC
CCTCCCTGCCCGGCTTGGAGCCCAGCCGGCGGGAAGCCATATACACTGCCATGAACCAAGTCCTGTGCAG
AATTCACAGTGTGGACCTGCAGGCCACCAGCCTGGACAGCTTCGGCAAGCAAGGGGACTATATTCCTCGA
CAGGTGCAAACCTGGACCAAGCAGTACCGAGCAGCAGAAACCAGCAGCATCCCAGCAATGGAGAGGCTTA
TCCAGTGGCTGCCACTGCACCTTCCCAGGCAACAGAGAACCACGCTGGTGCATGGTGACTTCAGGCTGGA
CAACCTGATATTCCATCCTGAAAAGGCGGAAGTGCTCGCTGTCCTGGACTGGGAACTTTCCACCTTAGGA
GACCCCTTTGCTGATGTGGCCTACAGCTGCCTGGCCTACTACCTGCCATCCAGCTTTCCCATTCTGAGAG
GGTTCAGAGACCAGGATGTGACAAAGCTGGGCATCCCCACTGTGGAGGAATACTTCAGGATGTACTGTCT
TAACATGGGCATCCCACCCATCGACAACTGGAACTTCTACATGGCTTTCTCCTTTTTCCGGGTGGCTGCA
ATCCTACAGGGAGTCTACAAGCGGTCACTCACAGGCCAGGCAAGCTCAGCAACAGCCCAACAAAGTGGAA
AGCTCACTGAGTCCATGGCTGAGCTGGCCTGGGATTTTGCCACCAAAGAAGGGTTCCGGGTTTTCAAAGA
GATGCCAGCCACCAAAACACTGAGCAGATCCTACCATGCCTGGGCGGGACCGAGGTCCCCGAGGACTCCC
AAGGGTGTGAGGGGTCACAGCACTGTAGCAGCTGCTTCCCCTTCTCACGAGGCAAAGGGAGGCCTGGTCA
TCTCTCCAGAGGGCCTGTCTCCTGCGGTCAGAAAGTTGTATGAGCAGCTGGTGCAGTTTATAGAACAGAA
GGTGTACCCCCTGGAGCCAGAGCTGCAGAGACACCAGGCCTCGGCCGACAGGTGGAGCCCTTCCCCGCTG
ATAGAAGACCTCAAGGAGAAAGCCAAGGCTGAGGGACTTTGGAACCTTTTCCTACCCTTGGAGACTGATC
CTGAGAAAAAGTACGGAGCAGGGCTGACTAACGTGGAATATGCACATCTGTGTGAAGTGATGGGCATGTC
TCTGTATGCTTCTGAGATATTTAATTGCTCTGCCCCGGATACGGGGAATATGGAGATCCTGGTGCGGTAT
GGCACTGAGGAGCAGAAGGCCCGCTGGCTGGTGCCACTGTTGGAGGGCAGGATCCGTTCTTGCTTTGCCA
TGACTGAGCCTCAGGTGGCCTCCTCAGATGCCTCTAACATCGAGGCTTCCATCAAAGAGGAAGATGGCTG
CTATGTCATAAATGGTCACAAGTGGTGGACCTCAGGCATCCTGGATCCTCGATGCAAACTCTGTGTGTTT
ATGGGGAAAACAGACCCACAGGCCCCAAGGCACCAGCAACAATCTATGCTCTTGGTTCCCATGGACTCGC
CAGGAATCACAGTCATCCGGCCTCTGTCAGTGTTTGGTTTGGAGGATCCTCCAGGTGGCCACGGTGAAGT
ACGGTTCAAGGACGTGCGTGTGCCCAAGGAAAACATACTCCTGGGCCCTGGCCGAGGCTTTGAGATCGCT
CAGGGCAGGCTGGGGCCTGGCCGGATTCATCACTGCATGAGGTTGATTGGGTATTCAGAGAGGGCCCTGG
CACTCATGAAGACACGGGTGATGTCCCGCACGGCCTTCGGGAAGCCCCTTGTGGAGCAGGGCACCATCCT
GGCAGACATTGCCCGGTCACGTGTGGAGATCGAGCAGGCCCGGCTGCTGGTGCTGAAAGCTGCTCACCTC
ATGGATGTGGCCGGAAATAAGACTGCAGCTTTAGACATTGCAATGATTAAAATGGTCGTCCCTTCCATGG
CCTATCACGTAATTGACCGCGCTATTCAGGCCTTTGGAGCAGCGGGCCTCAGCAGTGACTACCCCCTGGC
TCAGTTCTTTGGCTGGGCCCGAGCCCTGCGCTTCGCTGATGGCCCTGATGAAGTACACCAGCTGACAGTG
GCTAAGATGGAACTGAAGAATCAGTCCAGGATGCAGGAACCAGCAGTGCCCAGAGTGTAG

Translation (1069 aa):
MLVRRLFQPSTLHWAWRTTALNHPLGRHQGGLRWTHSGGRSYRAVIFDTGGVLVPSPGTVAVGWEVQNHV
PSGTIVKAFIRGGDSGPWIRFIKGEITTEHFLEEFGRLCSEIAKTSVPVSSYFSLLTSEQVTKQFPVMTQ
AISQIRAKGLQTAVLTNNFHLSSGESFLPLDRKQFDVVVESCLEGICKPDPRIFQLCLQRLSLQPSEAIF
LDDLGSNLKVAASLGIHTIKVDRPETAVKELEALLGFPLHLGVPNTRPVRKTMAIPQDALEKYLKGLLGT
HSTGPMELLQFDHGQSNPTYYIRLADRQLVLRKKPSGTLLPSAHAIEREFRIMKALANAGVPVPTVLDLC
EDSSIIGTPFYLMEYCPGIIYKDPSLPGLEPSRREAIYTAMNQVLCRIHSVDLQATSLDSFGKQGDYIPR
QVQTWTKQYRAAETSSIPAMERLIQWLPLHLPRQQRTTLVHGDFRLDNLIFHPEKAEVLAVLDWELSTLG
DPFADVAYSCLAYYLPSSFPILRGFRDQDVTKLGIPTVEEYFRMYCLNMGIPPIDNWNFYMAFSFFRVAA
ILQGVYKRSLTGQASSATAQQSGKLTESMAELAWDFATKEGFRVFKEMPATKTLSRSYHAWAGPRSPRTP
KGVRGHSTVAAASPSHEAKGGLVISPEGLSPAVRKLYEQLVQFIEQKVYPLEPELQRHQASADRWSPSPL
IEDLKEKAKAEGLWNLFLPLETDPEKKYGAGLTNVEYAHLCEVMGMSLYASEIFNCSAPDTGNMEILVRY
GTEEQKARWLVPLLEGRIRSCFAMTEPQVASSDASNIEASIKEEDGCYVINGHKWWTSGILDPRCKLCVF
MGKTDPQAPRHQQQSMLLVPMDSPGITVIRPLSVFGLEDPPGGHGEVRFKDVRVPKENILLGPGRGFEIA
QGRLGPGRIHHCMRLIGYSERALALMKTRVMSRTAFGKPLVEQGTILADIARSRVEIEQARLLVLKAAHL
MDVAGNKTAALDIAMIKMVVPSMAYHVIDRAIQAFGAAGLSSDYPLAQFFGWARALRFADGPDEVHQLTV
AKMELKNQSRMQEPAVPRV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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