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Report for CCDS52154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52154.1 Public Mus musculus 7 Bckdha 23 108 98 CCDS HistoryNCBI Gene:12039Re-query CCDS DB by CCDS ID:52154.1Re-query CCDS DB by GeneID:12039See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071329.7 ENSMUSP00000071292.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071329.7Link to Ensembl Protein Viewer:ENSMUSP00000071292.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000071329Re-query CCDS DB by Protein ID:ENSMUSP00000071292
Original member NCBI NM_007533.5 NP_031559.3 Updated not alive Link to Nucleotide Sequence:NM_007533.5Link to Protein Sequence:NP_031559.3Re-query CCDS DB by Nucleotide ID:NM_007533Re-query CCDS DB by Protein ID:NP_031559
Current member NCBI NM_007533.6 NP_031559.3 Accepted alive Link to Nucleotide Sequence:NM_007533.6Link to Protein Sequence:NP_031559.3Re-query CCDS DB by Nucleotide ID:NM_007533Re-query CCDS DB by Protein ID:NP_031559Link to BLAST:NP_031559.3

Chromosomal Locations for CCDS 52154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25630263 25630433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25631000 25631171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25631342 25631483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25631638 25631844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25633240 25633401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25638162 25638270 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25641457 25641543 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25641644 25641826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25658633 25658740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGCGATAGTGATGTCTGCGGCCAAGATCTGGAGGCCGAGCCGTGGCCTGCGCCAGGCTGCTCTTCTCC
TGTTGGGACGATCTGGGGTTCGGGGCTTGGCTAGATCTCACCCCAGCAGGCAGCAGCAACAGCAGTTCCC
ATCCCTGGACGACAAGCCCCAGTTCCCAGGGGCCTCTGCAGAGTTTGTAGACAAGCTTGAGTTCATCCAG
CCCAATGTCATCTCCGGCATCCCCATCTACCGTGTCATGGACCGCCAGGGCCAGATCATCAACCCCAGTG
AAGATCCCCACCTGCCCCAGGAGGAGGTGCTGAAGTTCTACCGGAGCATGACGCTGCTCAACACCATGGA
CCGCATTCTCTATGAGTCCCAGCGGCAGGGCCGGATCTCCTTCTACATGACCAACTATGGCGAGGAGGGG
ACACATGTGGGCAGTGCCGCTGCCTTGGAGCGCACAGACCTGGTGTTTGGCCAGTACCGGGAGGCAGGTG
TGCTCATGTACCGGGACTACCCGCTGGAGCTGTTCATGTCCCAGTGCTACGGCAACGTGAATGACCCAGG
CAAGGGACGCCAGATGCCTGTTCACTACGGCTGCAAGGAACGCCACTTCGTCACCATTTCCTCTCCACTG
GCCACGCAGATCCCTCAGGCGGTAGGGGCAGCCTATGCTGCCAAGCGGGCCAATGCCAACCGGATTGTGA
TCTGTTACTTTGGCGAGGGGGCAGCCAGTGAAGGGGATGCCCACGCCGGTTTCAATTTCGCTGCCACCCT
GGAGTGTCCCATCATCTTCTTCTGCCGGAACAATGGCTATGCCATCTCCACACCAACCTCTGAGCAGTAC
CGTGGGGATGGCATAGCGGCTCGGGGCCCTGGGTACGGCATCATGTCAATCCGTGTGGACGGCAACGATG
TGTTTGCTGTGTACAATGCCACTAAGGAGGCCCGACGGCGGGCTGTGGCTGAGAACCAGCCCTTCCTCAT
TGAGGCCATGACCTACAGGATTGGCCACCACAGCACCAGTGACGACAGCTCAGCGTACCGTTCGGTGGAC
GAGGTCAATTACTGGGACAAGCAGGACCACCCAATCTCGAGGCTGAGGCAGTACCTGCTGAACCAGGGTT
GGTGGGATGAGGAACAGGAGAAGGCCTGGCGGAAGCAGTCACGAAAGAAGGTCATGGAAGCCTTTGAGCA
GGCTGAGCGGAAGCTAAAGCCGAACCCAAGCCTCCTCTTCTCCGATGTGTACCAGGAGATGCCCGCCCAG
CTCCGCAGGCAGCAGGAGTCGCTGGCACGGCACCTGCAGACTTACGGGGAGCACTACCCCCTGGACCACT
TTGACAAGTGA

Translation (446 aa):
MAIVMSAAKIWRPSRGLRQAALLLLGRSGVRGLARSHPSRQQQQQFPSLDDKPQFPGASAEFVDKLEFIQ
PNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQRQGRISFYMTNYGEEG
THVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVNDPGKGRQMPVHYGCKERHFVTISSPL
ATQIPQAVGAAYAAKRANANRIVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQY
RGDGIAARGPGYGIMSIRVDGNDVFAVYNATKEARRRAVAENQPFLIEAMTYRIGHHSTSDDSSAYRSVD
EVNYWDKQDHPISRLRQYLLNQGWWDEEQEKAWRKQSRKKVMEAFEQAERKLKPNPSLLFSDVYQEMPAQ
LRRQQESLARHLQTYGEHYPLDHFDK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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