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Report for CCDS52182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52182.1 Public Mus musculus 7 Atp4a 23 108 98 CCDS HistoryNCBI Gene:11944Re-query CCDS DB by CCDS ID:52182.1Re-query CCDS DB by GeneID:11944See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000170371.1 ENSMUSP00000131964.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170371.1Link to Ensembl Protein Viewer:ENSMUSP00000131964.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170371Re-query CCDS DB by Protein ID:ENSMUSP00000131964
Original member Current member NCBI NM_018731.3 NP_061201.2 Accepted alive Link to Nucleotide Sequence:NM_018731.3Link to Protein Sequence:NP_061201.2Re-query CCDS DB by Nucleotide ID:NM_018731Re-query CCDS DB by Protein ID:NP_061201Link to BLAST:NP_061201.2

Chromosomal Locations for CCDS 52182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30712251 30712262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30712354 30712494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30712609 30712668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30713084 30713287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30714971 30715084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30715319 30715571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30715741 30716009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30716535 30716733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30717052 30717161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30717236 30717370 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30717691 30717883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30718979 30719154 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30719993 30720129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30720217 30720340 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30720467 30720635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30720726 30720880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30722492 30722615 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30722920 30723065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30724193 30724326 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30724658 30724759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30724855 30724946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30725156 30725184 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3078 nt):
ATGGGGAAGGCAGAGAATTATGAACTGTACTCAGTGGAACTGGGGTCTGGCCCTGGTGGGGACATGACTG
CCAAGATGAGCAAGAAGAAGGCAGGAGGTGGGGGAGGCAAGAAGAAGGAGAAGCTGGAGAACATGAAGAA
GGAGATGGAGATTAACGACCACCAGCTATCAGTGTCTGAGCTGGAGCAGAAGTATCAGACCAGCGCCACC
AAGGGCCTGAAGGCGAGCCTGGCAGCTGAGCTGCTGCTGAGGGATGGACCCAATGCGCTCCGGCCACCTC
GGGGCACTCCCGAGTATGTGAAGTTTGCCCGTCAGCTGGCAGGTGGTCTGCAGTGCCTCATGTGGGTGGC
TGCTGCTATCTGCCTCATTGCCTTTGCCATCCAGGCCAGCGAGGGTGACCTGACCACTGATGATAATCTG
TACCTGGCGGTGGCACTCATTGCTGTGGTTGTGGTCACTGGCTGTTTTGGCTACTACCAGGAGTTCAAGA
GCACAAATATCATCGCCAGCTTCAAGAATCTTGTACCCCAGCAAGCCACTGTGATCCGAGACGGGGACAA
GTTCCAGATCAACGCGGATCAGCTTGTGGTGGGCGACCTGGTGGAGATGAAAGGCGGGGACCGCGTGCCA
GCAGACATCCGCATTCTGTCAGCCCAGGGCTGCAAGGTGGACAACTCCTCGCTCACTGGAGAGTCTGAAC
CGCAGACCCGCTCGCCCGAGTGTACACATGAGAGTCCCCTTGAGACCCGCAACATCGCCTTCTTCTCCAC
CATGTGTCTGGAGGGAACAGCTCAGGGTTTGGTGGTGAGCACCGGCGATCGCACCATCATTGGGCGCATC
GCCTCGCTGGCCTCGGGTGTGGAAAACGAGAAGACTCCGATTGCAATCGAGATTGAACATTTTGTGGACA
TCATTGCCGGCCTGGCCATCCTCTTCGGTGCCACATTCTTTGTGGTGGCCATGTGTATTGGCTATACCTT
CCTTCGGGCCATGGTCTTCTTCATGGCCATTGTGGTAGCCTATGTGCCTGAGGGGCTGCTGGCAACTGTC
ACAGTCTGCCTGTCACTGACAGCAAAGAGGTTGGCCAGTAAAAACTGCGTGGTTAAAAACTTAGAAGCAG
TTGAGACCCTAGGTTCTACATCAGTCATCTGCTCAGACAAGACAGGAACTCTCACTCAGAACCGCATGAC
GGTGTCTCATCTATGGTTTGACAACCATATCCACACGGCGGACACCACAGAAGACCAGTCAGGGCAAACG
TTCGATCAGTCGTCGGAGACATGGCGAGCGCTGTGCCGCGTGCTCACCCTGTGCAACCGCGCTGCCTTCA
AGTCCGGCCAGGACGCGGTGCCGGTGCCCAAGCGCATCGTGATCGGAGACGCGTCAGAGACTGCGCTGCT
CAAGTTTTCGGAGCTGACGTTGGGCAACGCCATGGGTTACAGGGACCGCTTCCCCAAAGTTTGCGAGATC
CCCTTCAACTCCATCAACAAGTTCCAGCTGTCCATTCATACCCTGGAGGATCCACGCGACTCCCGGCACC
TGCTGGTGATGAAGGGCGCCCCTGAGCGCGTGCTGGAGCGTTGCAGCTCCATCCTCATCAAGGGCCAGGA
GCTGCCTCTGGACGAGCAATGGCGTGAGGCCTTCCAGACAGCCTACCTCAGCCTGGGAGGCCTAGGCGAA
CGTGTTCTTGGTTTCTGCCAGCTCTACCTGAATGAGAAGGACTACCCACCTGGCTATGCCTTTGATGTGG
AGGCCATGAACTTTCCGAGTAGTGGCCTCTGCTTTGCGGGACTTGTATCCATGATTGACCCTCCCCGGGC
CACCGTTCCTGATGCTGTGCTCAAATGCCGCACGGCAGGCATCCGGGTGATCATGGTGACCGGTGACCAT
CCCATCACGGCCAAGGCCATCGCAGCCAGCGTGGGTATCATCTCAGAGGGCAGCGAGACAGTGGAAGACA
TCGCCGCCCGCCTCCGGATGCCGGTGGACCAGGTTAATAGGAAGGATGCCCGGGCCTGCGTGATCAATGG
TATGCAGCTGAAGGACATGGACCCGTCTGAGCTGGTGGAGGCGCTACGCACCCACCCTGAGATGGTGTTT
GCTCGAACCAGTCCTCAGCAGAAGCTGGGTGCCATTGTGGCTGTAACAGGGGATGGTGTGAATGACTCCC
CAGCCCTGAAGAAAGCTGACATTGGTGTAGCCATGGGCATTGCTGGCTCGGATGCTGCTAAAAATGCTGC
TGACATGATCTTGCTGGATGACAACTTTGCTTCCATTGTGACAGGCGTGGAGCAGGGCCGACTGATCTTT
GACAACCTGAAGAAATCCATTGCATATACACTGACCAAGAACATTCCAGAACTGACACCCTACCTTATCT
ATATCACTGTCAGTGTGCCCCTACCCCTTGGGTGTATCACCATTCTCTTCATAGAACTCTGCACAGATAT
CTTTCCATCTGTGTCCCTGGCGTACGAGAAGGCTGAGAGCGACATCATGCACCTGCGCCCACGGAACCCT
AAGCGTGACCGGTTGGTCAACGAACCCCTGGCTGCTTATTCCTATTTCCAGATTGGTGCCATTCAGTCAT
TTGCCGGCTTTGCTGACTACTTCACGGCCATGGCGCAGGAGGGCTGGTTCCCTCTGTTGTGTGTAGGACT
GCGGCCACAATGGGAGGACCACCATCTACAAGATCTTCAAGACAGCTACGGCCAGGAATGGACATTTGGT
CAGCGCCTGTACCAGCAGTACACCTGTTACACCGTGTTCTTCATCAGCATCGAGATGTGCCAGATCGCAG
ATGTCCTCATCCGCAAGACACGGCGCCTCTCTGTTTTCCAGCAGGGATTCTTCAGGAACAAGATCCTGGT
GATCGCCATCGTGTTCCAGGTCTGCATTGGCTGCTTCCTGTGCTACTGCCCAGGGATGCCTAACATCTTC
AACTTCATGCCCATCCGGTTCCAGTGGTGGCTGGTCCCCATGCCCTTCGGCCTTCTCATCTTTGTCTATG
ATGAGATCCGGAAACTTGGAGTTCGCTGTTGCCCAGGGAGCTGGTGGGACCAGGAACTCTACTATTAG

Translation (1025 aa):
MGKAENYELYSVELGSGPGGDMTAKMSKKKAGGGGGKKKEKLENMKKEMEINDHQLSVSELEQKYQTSAT
KGLKASLAAELLLRDGPNALRPPRGTPEYVKFARQLAGGLQCLMWVAAAICLIAFAIQASEGDLTTDDNL
YLAVALIAVVVVTGCFGYYQEFKSTNIIASFKNLVPQQATVIRDGDKFQINADQLVVGDLVEMKGGDRVP
ADIRILSAQGCKVDNSSLTGESEPQTRSPECTHESPLETRNIAFFSTMCLEGTAQGLVVSTGDRTIIGRI
ASLASGVENEKTPIAIEIEHFVDIIAGLAILFGATFFVVAMCIGYTFLRAMVFFMAIVVAYVPEGLLATV
TVCLSLTAKRLASKNCVVKNLEAVETLGSTSVICSDKTGTLTQNRMTVSHLWFDNHIHTADTTEDQSGQT
FDQSSETWRALCRVLTLCNRAAFKSGQDAVPVPKRIVIGDASETALLKFSELTLGNAMGYRDRFPKVCEI
PFNSINKFQLSIHTLEDPRDSRHLLVMKGAPERVLERCSSILIKGQELPLDEQWREAFQTAYLSLGGLGE
RVLGFCQLYLNEKDYPPGYAFDVEAMNFPSSGLCFAGLVSMIDPPRATVPDAVLKCRTAGIRVIMVTGDH
PITAKAIAASVGIISEGSETVEDIAARLRMPVDQVNRKDARACVINGMQLKDMDPSELVEALRTHPEMVF
ARTSPQQKLGAIVAVTGDGVNDSPALKKADIGVAMGIAGSDAAKNAADMILLDDNFASIVTGVEQGRLIF
DNLKKSIAYTLTKNIPELTPYLIYITVSVPLPLGCITILFIELCTDIFPSVSLAYEKAESDIMHLRPRNP
KRDRLVNEPLAAYSYFQIGAIQSFAGFADYFTAMAQEGWFPLLCVGLRPQWEDHHLQDLQDSYGQEWTFG
QRLYQQYTCYTVFFISIEMCQIADVLIRKTRRLSVFQQGFFRNKILVIAIVFQVCIGCFLCYCPGMPNIF
NFMPIRFQWWLVPMPFGLLIFVYDEIRKLGVRCCPGSWWDQELYY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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