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Report for CCDS52313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52313.1 Public Mus musculus 7 Alg8 23 108 98 CCDS HistoryNCBI Gene:381903Re-query CCDS DB by CCDS ID:52313.1Re-query CCDS DB by GeneID:381903See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000098300.5 ENSMUSP00000095901.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000098300.5Link to Ensembl Protein Viewer:ENSMUSP00000095901.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000098300Re-query CCDS DB by Protein ID:ENSMUSP00000095901
Original member Current member NCBI NM_199035.2 NP_950200.2 Accepted alive Link to Nucleotide Sequence:NM_199035.2Link to Protein Sequence:NP_950200.2Re-query CCDS DB by Nucleotide ID:NM_199035Re-query CCDS DB by Protein ID:NP_950200Link to BLAST:NP_950200.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_950200.2 526 Q6P8H8 526 100% 0 0

Chromosomal Locations for CCDS 52313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97371638 97371732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97373669 97373747 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97378101 97378294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97379808 97379917 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97380241 97380308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97382574 97382700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97382919 97383022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97383686 97383806 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97386802 97386941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97388449 97388588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97390242 97390339 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97390889 97390961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97391528 97391759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1581 nt):
ATGGCGGCGTCCGGGTCTGCAACCGCTGGTGGCCATTGGTTCTCTGCTTTGGCTCTTGGGGTGACTCTCC
TTAAGTGCCTTCTCATCCCCACCTACCATTCCACGGATTTTGAAGTACACCGAAATTGGCTTGCAATCAC
TCACAGCCTCCCAATATCTCAGTGGTATTATGAGGCAACTTCAGAGTGGACCTTGGATTACCCCCCCTTT
TTTGCATGGTTTGAGTACGCCTTATCACATATTGCCAAATACTTTGATCAAGAGATGCTCAATATTCATA
ACCTGAACTATTACAGTTCAAGGACATTGCTTTTCCAGAGGTTTTCTGTCATCTTGACAGATGCACTCTT
TGTGTATGCTGTCCATGAGTGCTGTAAATGCATTGATGGAAAAAGAACAGGCAAAGACCTCACAGAGAAA
CCAAAGTTTATTCTGTCCGTGCTCCTGCTGTGGAACTTTGGGTTGTTAATTGTAGACCATATTCATTTTC
AGTACAATGGCTTTCTGTCTGGATTACTGCTGTTGTCCATTGCACGTCTATTTCAGAAAAGGCACATTGA
AGGGGCGTTGCTCTTTGCTGTCCTCCTCCATCTCAAGCACATCTACCTATATGTGGCACCAGCCTATGGT
GTCTATCTGCTGCGGTCCTACTGCTTCACTGCAAGTAAACCAGATGGCAGTGTCCGTTGGAGCAGCTTCA
GCGTTGTCCGCGTTACTTCCCTGGGGCTGATCGTGTTCCTAGTTTCTGCTCTTTCGTTGGGCCCTTTCCT
AGCCTTGAACCAGCTGCCACAAGTCTTTTCCCGACTCTTTCCTTTCAAGAGGGGCCTTTGCCATGCCTAC
TGGGCTCCAAACTTCTGGGCTTTGTACAATGCTTTGGACAAAGTACTGTCTGTAATTGGTTTGAAATTGA
AGCTTCTTGACCCCAGCCAGATCCCCAGGGCCTCAATGACAAGTGGTTTGGTTCAGCAGTTCCAGCACAC
AGTCCTTCCCTCAGTTTCCCCTTTGGCAACCCTCATCTGCACACTGATAGCCATATTGCCCTCTGTTTTC
TGTCTTTGGTTTAAACCCCAAGGGCCCAGAGGCTTTCTCCGATGCCTGGTTCTTTGTGCCTTGAGTTCCT
TCATGTTTGGGTGGCATGTCCATGAGAAAGCCATACTCCTTGCGATTCTCCCAATGAGCCTGTTGTCTGT
GGAAAAAGCAGGAGATGCGACAGTTTTTCTGATTCTGGCGACAACAGGACACTATTCCCTCTTCCCCCTG
CTCTTCACTGCACCAGAACTTCCCATTAAAATCTTACTCATGTTACTGTTCACGGTTTATAGTATTTCCT
CACTGAAGACACTATTCAGAAAAGAAAAACCTCTTTTTAATTGGATGGAAACTGTGTACCTCCTTGGCCT
GGGGCCTCTGGAAGTCTGCTGTGAATTCCTACTCCCGTTTACCTCCTGGAAGCTGAAGTACCCCTTCATC
CCTTTGCTGCTGACCTCGGTGTACTGTGCAGTGGGCATCACATACGCCTGGACCAGGCTGTATGCTTCAG
TGTTGACTGGCTCCCTTGTCAGCAAGACAAAGAAACATTGA

Translation (526 aa):
MAASGSATAGGHWFSALALGVTLLKCLLIPTYHSTDFEVHRNWLAITHSLPISQWYYEATSEWTLDYPPF
FAWFEYALSHIAKYFDQEMLNIHNLNYYSSRTLLFQRFSVILTDALFVYAVHECCKCIDGKRTGKDLTEK
PKFILSVLLLWNFGLLIVDHIHFQYNGFLSGLLLLSIARLFQKRHIEGALLFAVLLHLKHIYLYVAPAYG
VYLLRSYCFTASKPDGSVRWSSFSVVRVTSLGLIVFLVSALSLGPFLALNQLPQVFSRLFPFKRGLCHAY
WAPNFWALYNALDKVLSVIGLKLKLLDPSQIPRASMTSGLVQQFQHTVLPSVSPLATLICTLIAILPSVF
CLWFKPQGPRGFLRCLVLCALSSFMFGWHVHEKAILLAILPMSLLSVEKAGDATVFLILATTGHYSLFPL
LFTAPELPIKILLMLLFTVYSISSLKTLFRKEKPLFNWMETVYLLGLGPLEVCCEFLLPFTSWKLKYPFI
PLLLTSVYCAVGITYAWTRLYASVLTGSLVSKTKKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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