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Report for CCDS5254.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5254.1 Public Homo sapiens 6 SYNJ2 24 110 108 CCDS HistoryNCBI Gene:8871Re-query CCDS DB by CCDS ID:5254.1Re-query CCDS DB by GeneID:8871See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5254.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000355585.9 ENSP00000347792.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000355585.9Link to Ensembl Protein Viewer:ENSP00000347792.4Re-query CCDS DB by Nucleotide ID:ENST00000355585Re-query CCDS DB by Protein ID:ENSP00000347792
Original member Current member NCBI NM_003898.4 NP_003889.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003898.4Link to Protein Sequence:NP_003889.1Re-query CCDS DB by Nucleotide ID:NM_003898Re-query CCDS DB by Protein ID:NP_003889Link to BLAST:NP_003889.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003889.1 1496 O15056-1 1496 100% 0 0

Chromosomal Locations for CCDS 5254.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 157981962 157982088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158017204 158017290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158028756 158029026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158033455 158033680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158043316 158043399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158054967 158055028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158059257 158059353 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158061992 158062164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158063791 158063872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158064601 158064750 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158064826 158064991 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158066444 158066635 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158068647 158068728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158069533 158069673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158071602 158071794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158074580 158074738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158076626 158076782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158078164 158078281 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158081109 158081327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158081432 158081510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158083429 158083597 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158084001 158084174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158086855 158086989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158088660 158088772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158089839 158089947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158092926 158093104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 158095618 158096364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4491 nt):
ATGGCCCTGAGCAAAGGGCTGCGGCTGCTGGGGCGCCTGGGGGCCGAGGGGGACTGTAGCGTGCTGCTGG
AGGCGCGCGGCCGCGACGACTGCCTGCTGTTCGAGGCCGGCACGGTGGCCACGCTGGCTCCAGAAGAAAA
GGAAGTCATTAAAGGACAGTATGGCAAGCTCACGGACGCGTACGGCTGCCTGGGGGAGCTGAGGCTGAAA
TCTGGTGGCACGTCTCTGAGCTTCCTGGTGTTGGTGACAGGCTGCACATCTGTGGGCAGAATTCCAGATG
CTGAAATCTACAAAATCACTGCCACTGACTTTTACCCTCTTCAGGAAGAGGCCAAGGAGGAGGAACGCCT
CATAGCTTTGAAGAAAATCCTCAGCTCGGGGGTGTTCTATTTCTCATGGCCAAACGATGGGTCTCGCTTT
GACCTGACTGTCCGCACGCAGAAGCAGGGGGATGACAGCTCTGAATGGGGGAACTCCTTCTTCTGGAACC
AGCTGTTGCACGTGCCCTTGAGGCAGCACCAGGTGAGCTGCTGTGACTGGCTGCTGAAGATCATCTGCGG
GGTGGTCACCATCCGCACCGTGTATGCCTCCCACAAGCAGGCCAAGGCCTGCCTCGTCTCTCGCGTTAGC
TGTGAGCGCACAGGCACTCGCTTCCACACCCGTGGCGTGAACGACGACGGCCATGTGTCCAACTTCGTGG
AGACAGAGCAGATGATTTACATGGACGATGGAGTGTCATCTTTTGTCCAGATCAGAGGCTCCGTTCCGCT
GTTCTGGGAACAGCCAGGGCTTCAGGTTGGCTCCCATCATCTGAGACTCCACAGAGGCCTGGAAGCCAAT
GCCCCTGCTTTCGACAGGCACATGGTGCTTCTGAAGGAGCAGTACGGGCAGCAGGTGGTCGTGAACCTTC
TGGGAAGCAGAGGCGGAGAGGAGGTGCTCAACAGAGCCTTCAAGAAGCTGCTCTGGGCTTCTTGCCACGC
GGGCGACACGCCTATGATCAATTTTGACTTCCATCAGTTTGCCAAAGGTGGGAAGCTAGAGAAATTGGAG
ACCCTCTTGAGGCCACAGTTAAAGCTGCACTGGGAAGACTTCGATGTGTTCACAAAGGGGGAGAACGTCA
GTCCACGTTTTCAGAAAGGCACTTTGCGGATGAACTGTCTTGACTGCCTGGACCGAACCAACACTGTGCA
GAGCTTCATCGCGCTCGAGGTCCTGCATCTGCAGCTCAAGACCCTGGGGCTGAGTTCAAAACCCATCGTT
GACCGCTTTGTGGAGTCCTTCAAAGCCATGTGGTCTCTGAATGGCCACAGCCTGAGCAAGGTGTTCACAG
GCAGCAGAGCCCTGGAAGGGAAGGCCAAGGTGGGGAAGCTGAAGGATGGAGCCCGGTCCATGTCTCGAAC
CATCCAGTCCAACTTCTTCGACGGGGTGAAGCAGGAGGCCATCAAGCTGCTGCTGGTTGGGGACGTCTAC
GGCGAGGAGGTGGCAGACAAAGGGGGCATGCTGCTGGACAGCACGGCGCTCCTGGTGACTCCCAGGATCC
TGAAAGCTATGACTGAGCGTCAGTCCGAATTCACAAATTTCAAGCGGATCCGGATTGCTATGGGGACCTG
GAACGTGAACGGAGGAAAGCAGTTCCGGAGCAACGTGCTCAGGACGGCGGAGCTGACAGACTGGCTGCTC
GACTCGCCCCAGCTCTCGGGAGCTACCGACTCCCAGGATGACAGCAGCCCAGCTGACATATTTGCTGTGG
GGTTTGAAGAGATGGTGGAATTGAGCGCAGGGAATATTGTCAATGCCAGTACTACCAACAAGAAGATGTG
GGGTGAACAGCTTCAGAAAGCCATCTCACGCTCTCATAGATACATTCTGTTGACTTCGGCACAGCTGGTG
GGCGTCTGTCTTTATATCTTTGTACGTCCATACCATGTCCCGTTCATCAGGGACGTAGCCATCGACACAG
TGAAGACGGGCATGGGGGGCAAGGCGGGGAACAAGGGCGCCGTCGGCATCCGCTTCCAGTTCCACAGCAC
CAGCTTCTGCTTCATATGTAGTCACCTGACGGCCGGGCAGTCCCAGGTGAAGGAGCGGAATGAAGACTAC
AAGGAGATCACCCAGAAACTCTGCTTCCCAATGGGGAGAAATGTTTTTTCTCATGATTATGTATTTTGGT
GTGGCGATTTCAACTACCGCATTGATCTTACTTATGAAGAAGTCTTCTATTTTGTTAAACGCCAAGACTG
GAAGAAACTTCTGGAATTTGATCAACTACAGCTACAGAAATCAAGTGGAAAAATTTTTAAGGACTTTCAC
GAAGGAGCCATTAACTTTGGACCCACCTACAAGTATGACGTTGGCTCAGCCGCCTACGATACAAGCGACA
AATGCCGCACCCCCGCCTGGACAGACAGGGTGCTGTGGTGGAGGAAGAAACATCCCTTTGATAAAACAGC
TGGAGAACTCAACCTTCTAGACAGTGATCTAGATGTTGACACCAAAGTCAGACACACCTGGTCTCCTGGT
GCCCTGCAGTATTATGGTCGTGCGGAGCTACAAGCGTCTGATCACAGACCTGTGCTGGCGATCGTGGAGG
TGGAAGTTCAGGAAGTCGATGTGGGTGCTCGGGAGAGGGTTTTCCAGGAAGTGTCCTCCTTCCAGGGCCC
CCTGGATGCCACTGTTGTAGTAAACCTTCAATCACCGACCTTAGAAGAGAAAAACGAGTTTCCAGAGGAC
CTGCGTACTGAGCTCATGCAGACCTTGGGGAGTTATGGGACAATTGTTCTTGTCAGGATCAACCAAGGGC
AGATGCTGGTAACTTTTGCAGACAGTCACTCGGCTCTCAGTGTCCTGGACGTGGACGGTATGAAGGTGAA
AGGCAGAGCAGTGAAGATTAGACCGAAGACCAAGGACTGGCTGAAAGGTTTGCGAGAGGAGATCATTCGG
AAACGAGACAGCATGGCCCCCGTGTCTCCCACTGCCAACTCCTGTTTGCTGGAGGAAAACTTTGACTTCA
CAAGTTTGGACTATGAGTCAGAAGGGGATATTCTTGAAGACGATGAAGACTACTTGGTGGATGAATTCAA
TCAGCCTGGAGTCTCGGACAGTGAACTCGGGGGAGACGACCTCTCTGATGTCCCCGGCCCCACAGCACTG
GCTCCTCCCAGCAAGTCACCTGCTCTCACCAAAAAGAAGCAGCATCCAACGTACAAAGATGACGCGGACC
TGGTGGAGCTCAAGCGGGAGCTGGAAGCCGTCGGGGAGTTCCGCCACCGTTCTCCGAGCAGGTCTCTGTC
GGTCCCCAACCGGCCTCGGCCACCTCAACCCCCGCAGAGACCCCCCCCTCCAACCGGTTTAATGGTGAAA
AAGTCGGCTTCAGATGCGTCCATCTCCTCCGGCACCCATGGACAGTATTCAATTTTGCAGACGGCAAGAC
TTCTACCAGGAGCACCTCAGCAACCTCCCAAGGCTCGGACTGGAATAAGTAAACCTTATAATGTCAAGCA
GATCAAAACCACCAATGCCCAGGAGGCAGAAGCAGCAATCCGGTGTCTCCTGGAAGCCAGAGGAGGTGCC
TCCGAAGAAGCCCTAAGTGCCGTGGCCCCAAGGGACCTTGAAGCATCCTCTGAACCAGAGCCCACACCGG
GGGCAGCCAAACCAGAGACCCCACAGGCGCCCCCACTCCTTCCCCGTCGGCCCCCACCCAGAGTTCCTGC
CATCAAGAAGCCAACCTTGAGAAGGACAGGAAAGCCCCTGTCACCGGAAGAACAGTTTGAGCAACAGACT
GTCCATTTTACAATCGGGCCCCCGGAGACAAGCGTTGAGGCCCCTCCTGTCGTGACAGCCCCTCGAGTCC
CTCCTGTTCCCAAACCAAGAACATTTCAGCCTGGGAAAGCTGCAGAGAGGCCAAGCCACAGGAAGCCAGC
ATCAGACGAAGCCCCTCCTGGGGCAGGAGCCTCTGTGCCACCACCTCTGGAGGCGCCGCCTCTTGTGCCC
AAGGTACCCCCGAGGAGGAAGAAGTCAGCCCCCGCAGCCTTCCACCTGCAGGTCCTGCAGAGCAACAGCC
AGCTTCTCCAGGGCCTCACTTACAATAGCAGTGACAGCCCCTCTGGGCACCCACCTGCCGCGGGCACCGT
CTTCCCACAAGGGGACTTTCTCAGCACTTCATCTGCTACAAGCCCCGACAGCGATGGCACCAAAGCGATG
AAGCCAGAGGCAGCCCCACTTCTTGGTGATTATCAGGACCCCTTCTGGAACCTTCTTCACCACCCTAAAC
TGTTGAATAACACTTGGCTTTCTAAGAGCTCAGACCCTTTGGACTCAGGAACCAGGAGCCCCAAAAGAGA
TCCCATAGACCCAGTGTCAGCTGGCGCTTCAGCTGCCAAGGCAGAGCTGCCACCAGATCATGAACACAAA
ACCTTAGGTCACTGGGTGACAATCAGTGACCAAGAAAAGAGGACAGCACTGCAGGTGTTTGACCCACTGG
CAAAAACATGA

Translation (1496 aa):
MALSKGLRLLGRLGAEGDCSVLLEARGRDDCLLFEAGTVATLAPEEKEVIKGQYGKLTDAYGCLGELRLK
SGGTSLSFLVLVTGCTSVGRIPDAEIYKITATDFYPLQEEAKEEERLIALKKILSSGVFYFSWPNDGSRF
DLTVRTQKQGDDSSEWGNSFFWNQLLHVPLRQHQVSCCDWLLKIICGVVTIRTVYASHKQAKACLVSRVS
CERTGTRFHTRGVNDDGHVSNFVETEQMIYMDDGVSSFVQIRGSVPLFWEQPGLQVGSHHLRLHRGLEAN
APAFDRHMVLLKEQYGQQVVVNLLGSRGGEEVLNRAFKKLLWASCHAGDTPMINFDFHQFAKGGKLEKLE
TLLRPQLKLHWEDFDVFTKGENVSPRFQKGTLRMNCLDCLDRTNTVQSFIALEVLHLQLKTLGLSSKPIV
DRFVESFKAMWSLNGHSLSKVFTGSRALEGKAKVGKLKDGARSMSRTIQSNFFDGVKQEAIKLLLVGDVY
GEEVADKGGMLLDSTALLVTPRILKAMTERQSEFTNFKRIRIAMGTWNVNGGKQFRSNVLRTAELTDWLL
DSPQLSGATDSQDDSSPADIFAVGFEEMVELSAGNIVNASTTNKKMWGEQLQKAISRSHRYILLTSAQLV
GVCLYIFVRPYHVPFIRDVAIDTVKTGMGGKAGNKGAVGIRFQFHSTSFCFICSHLTAGQSQVKERNEDY
KEITQKLCFPMGRNVFSHDYVFWCGDFNYRIDLTYEEVFYFVKRQDWKKLLEFDQLQLQKSSGKIFKDFH
EGAINFGPTYKYDVGSAAYDTSDKCRTPAWTDRVLWWRKKHPFDKTAGELNLLDSDLDVDTKVRHTWSPG
ALQYYGRAELQASDHRPVLAIVEVEVQEVDVGARERVFQEVSSFQGPLDATVVVNLQSPTLEEKNEFPED
LRTELMQTLGSYGTIVLVRINQGQMLVTFADSHSALSVLDVDGMKVKGRAVKIRPKTKDWLKGLREEIIR
KRDSMAPVSPTANSCLLEENFDFTSLDYESEGDILEDDEDYLVDEFNQPGVSDSELGGDDLSDVPGPTAL
APPSKSPALTKKKQHPTYKDDADLVELKRELEAVGEFRHRSPSRSLSVPNRPRPPQPPQRPPPPTGLMVK
KSASDASISSGTHGQYSILQTARLLPGAPQQPPKARTGISKPYNVKQIKTTNAQEAEAAIRCLLEARGGA
SEEALSAVAPRDLEASSEPEPTPGAAKPETPQAPPLLPRRPPPRVPAIKKPTLRRTGKPLSPEEQFEQQT
VHFTIGPPETSVEAPPVVTAPRVPPVPKPRTFQPGKAAERPSHRKPASDEAPPGAGASVPPPLEAPPLVP
KVPPRRKKSAPAAFHLQVLQSNSQLLQGLTYNSSDSPSGHPPAAGTVFPQGDFLSTSSATSPDSDGTKAM
KPEAAPLLGDYQDPFWNLLHHPKLLNNTWLSKSSDPLDSGTRSPKRDPIDPVSAGASAAKAELPPDHEHK
TLGHWVTISDQEKRTALQVFDPLAKT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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