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Report for CCDS5274.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5274.1 Public Homo sapiens 6 SLC22A1 24 110 108 CCDS HistoryNCBI Gene:6580Re-query CCDS DB by CCDS ID:5274.1Re-query CCDS DB by GeneID:6580See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5274.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000366963.9 ENSP00000355930.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000366963.9Link to Ensembl Protein Viewer:ENSP00000355930.4Re-query CCDS DB by Nucleotide ID:ENST00000366963Re-query CCDS DB by Protein ID:ENSP00000355930
Original member Current member NCBI NM_003057.3 NP_003048.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_003057.3Link to Protein Sequence:NP_003048.1Re-query CCDS DB by Nucleotide ID:NM_003057Re-query CCDS DB by Protein ID:NP_003048Link to BLAST:NP_003048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_003048.1 554 O15245-1 554 100% 0 0

Chromosomal Locations for CCDS 5274.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 160121936 160122346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160130104 160130207 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160132232 160132386 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160133957 160134125 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160136220 160136334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160136544 160136650 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160139653 160139867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160143541 160143649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160154798 160154910 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160155975 160156074 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 160158516 160158582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1665 nt):
ATGCCCACCGTGGATGACATTCTGGAGCAGGTTGGGGAGTCTGGCTGGTTCCAGAAGCAAGCCTTCCTCA
TCTTATGCCTGCTGTCGGCTGCCTTTGCGCCCATCTGTGTGGGCATCGTCTTCCTGGGTTTCACACCTGA
CCACCACTGCCAGAGTCCTGGGGTGGCTGAGCTGAGCCAGCGCTGTGGCTGGAGCCCTGCGGAGGAGCTG
AACTATACAGTGCCAGGCCTGGGGCCCGCGGGCGAGGCCTTCCTTGGCCAGTGCAGGCGCTATGAAGTGG
ACTGGAACCAGAGCGCCCTCAGCTGTGTAGACCCCCTGGCTAGCCTGGCCACCAACAGGAGCCACCTGCC
GCTGGGTCCCTGCCAGGATGGCTGGGTGTATGACACGCCCGGCTCTTCCATCGTCACTGAGTTCAACCTG
GTGTGTGCTGACTCCTGGAAGCTGGACCTCTTTCAGTCCTGTTTGAATGCGGGCTTCTTGTTTGGCTCTC
TCGGTGTTGGCTACTTTGCAGACAGGTTTGGCCGTAAGCTGTGTCTCCTGGGAACTGTGCTGGTCAACGC
GGTGTCGGGCGTGCTCATGGCCTTCTCGCCCAACTACATGTCCATGCTGCTCTTCCGCCTGCTGCAGGGC
CTGGTCAGCAAGGGCAACTGGATGGCTGGCTACACCCTAATCACAGAATTTGTTGGCTCGGGCTCCAGAA
GAACGGTGGCGATCATGTACCAGATGGCCTTCACGGTGGGGCTGGTGGCGCTTACCGGGCTGGCCTACGC
CCTGCCTCACTGGCGCTGGCTGCAGCTGGCAGTCTCCCTGCCCACCTTCCTCTTCCTGCTCTACTACTGG
TGTGTGCCGGAGTCCCCTCGGTGGCTGTTATCACAAAAAAGAAACACTGAAGCAATAAAGATAATGGACC
ACATCGCTCAAAAGAATGGGAAGTTGCCTCCTGCTGATTTAAAGATGCTTTCCCTCGAAGAGGATGTCAC
CGAAAAGCTGAGCCCTTCATTTGCAGACCTGTTCCGCACGCCGCGCCTGAGGAAGCGCACCTTCATCCTG
ATGTACCTGTGGTTCACGGACTCTGTGCTCTATCAGGGGCTCATCCTGCACATGGGCGCCACCAGCGGGA
ACCTCTACCTGGATTTCCTTTACTCCGCTCTGGTCGAAATCCCGGGGGCCTTCATAGCCCTCATCACCAT
TGACCGCGTGGGCCGCATCTACCCCATGGCCATGTCAAATTTGTTGGCGGGGGCAGCCTGCCTCGTCATG
ATTTTTATCTCACCTGACCTGCACTGGTTAAACATCATAATCATGTGTGTTGGCCGAATGGGAATCACCA
TTGCAATACAAATGATCTGCCTGGTGAATGCTGAGCTGTACCCCACATTCGTCAGGAACCTCGGAGTGAT
GGTGTGTTCCTCCCTGTGTGACATAGGTGGGATAATCACCCCCTTCATAGTCTTCAGGCTGAGGGAGGTC
TGGCAAGCCTTGCCCCTCATTTTGTTTGCGGTGTTGGGCCTGCTTGCCGCGGGAGTGACGCTACTTCTTC
CAGAGACCAAGGGGGTCGCTTTGCCAGAGACCATGAAGGACGCCGAGAACCTTGGGAGAAAAGCAAAGCC
CAAAGAAAACACGATTTACCTTAAGGTCCAAACCTCAGAACCCTCGGGCACCTGA

Translation (554 aa):
MPTVDDILEQVGESGWFQKQAFLILCLLSAAFAPICVGIVFLGFTPDHHCQSPGVAELSQRCGWSPAEEL
NYTVPGLGPAGEAFLGQCRRYEVDWNQSALSCVDPLASLATNRSHLPLGPCQDGWVYDTPGSSIVTEFNL
VCADSWKLDLFQSCLNAGFLFGSLGVGYFADRFGRKLCLLGTVLVNAVSGVLMAFSPNYMSMLLFRLLQG
LVSKGNWMAGYTLITEFVGSGSRRTVAIMYQMAFTVGLVALTGLAYALPHWRWLQLAVSLPTFLFLLYYW
CVPESPRWLLSQKRNTEAIKIMDHIAQKNGKLPPADLKMLSLEEDVTEKLSPSFADLFRTPRLRKRTFIL
MYLWFTDSVLYQGLILHMGATSGNLYLDFLYSALVEIPGAFIALITIDRVGRIYPMAMSNLLAGAACLVM
IFISPDLHWLNIIIMCVGRMGITIAIQMICLVNAELYPTFVRNLGVMVCSSLCDIGGIITPFIVFRLREV
WQALPLILFAVLGLLAAGVTLLLPETKGVALPETMKDAENLGRKAKPKENTIYLKVQTSEPSGT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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