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Report for CCDS52852.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52852.1 Public Mus musculus 9 Aldh1a2 23 108 98 CCDS HistoryNCBI Gene:19378Re-query CCDS DB by CCDS ID:52852.1Re-query CCDS DB by GeneID:19378See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52852.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000034723.5 ENSMUSP00000034723.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000034723.5Link to Ensembl Protein Viewer:ENSMUSP00000034723.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000034723Re-query CCDS DB by Protein ID:ENSMUSP00000034723
Original member Current member NCBI NM_009022.4 NP_033048.2 Accepted alive Link to Nucleotide Sequence:NM_009022.4Link to Protein Sequence:NP_033048.2Re-query CCDS DB by Nucleotide ID:NM_009022Re-query CCDS DB by Protein ID:NP_033048Link to BLAST:NP_033048.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033048.2 518 Q62148 518 100% 0 0

Chromosomal Locations for CCDS 52852.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 71215847 71215963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71252598 71252702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71252916 71253056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71255034 71255163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71261731 71261792 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71263787 71263915 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71264033 71264146 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71281604 71281706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71283378 71283562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71284854 71285018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71285116 71285273 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71285920 71285994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 71293606 71293678 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1557 nt):
ATGACTTCCAGCGAGATCGCCATGCCGGGCGAGGTGAAGGCCGACCCCGCCGCGCTCATGGCCTCGCTGC
AGCTCCTGCCGTCGCCCACGCCCAACCTCGAGATCAAGTACACCAAGATCTTTATTAACAATGAATGGCA
GAACTCAGAGAGTGGGAGAGTGTTCCCTGTCTGTAATCCAGCCACAGGAGAGCAAGTGTGTGAAGTTCAA
GAAGCAGACAAGGTGGATATAGACAAGGCAGTGCAAGCAGCCCGCCTTGCCTTCTCTCTTGGTTCTGTGT
GGAGAAGGATGGATGCGTCTGAAAGAGGACGTCTGTTGGACAAGCTTGCAGACTTGGTGGAACGGGACAG
GGCAACTCTTGCAACTATGGAATCCCTAAATGGCGGTAAGCCATTCCTGCAAGCTTTTTACATCGATTTG
CAGGGAGTCATCAAAACCCTGAGGTATTATGCAGGCTGGGCTGATAAAATTCACGGAATGACCATTCCTG
TAGATGGAGACTATTTTACTTTCACAAGACACGAGCCCATTGGAGTGTGTGGACAGATCATCCCGTGGAA
CTTCCCCCTGCTGATGTTCACCTGGAAAATTGCTCCCGCATTGTGCTGTGGTAACACCGTGGTCATCAAA
CCCGCTGAGCAGACACCGCTCAGTGCACTGTATATGGGAGCCCTCATCAAGGAGGCTGGCTTTCCACCCG
GAGTCGTCAATATCCTGCCAGGGTATGGGCCAACAGCAGGGGCAGCAATCGCTTCTCACATCGGCATAGA
CAAGATTGCATTCACAGGCTCTACTGAGGTTGGAAAGCTTATTCAAGAAGCAGCTGGAAGAAGTAACCTG
AAGAGAGTGACCCTGGAACTCGGAGGGAAGAGCCCTAATATTATTTTTGCAGATGCTGACTTGGACTACG
CTGTGGAGCAGGCTCACCAGGGTGTGTTCTTCAACCAAGGCCAGTGCTGCACCGCAGGGTCTCGCATCTT
TGTGGAAGAATCCATCTATGAGGAATTTGTGAAAAGAAGTGTGGAAAGGGCCAAGAGGCGCATTGTGGGG
AGCCCCTTTGATCCCACAACTGAGCAGGGTCCTCAGATCGATAAGAAACAATACAACAAAGTCCTGGAGC
TTATCCAGAGCGGTGTGGCTGAGGGCGCCAAGCTGGAGTGCGGAGGCAAAGGGCTGGGAAGGAAGGGCTT
CTTCATTGAGCCCACCGTGTTCTCCAACGTCACTGATGACATGCGGATTGCCAAGGAGGAGATCTTTGGT
CCTGTTCAAGAAATTTTGAGGTTTAAGACTATGGATGAAGTTATAGAAAGAGCCAATAACTCAGACTTTG
GACTTGTAGCAGCTGTCTTCACTAATGACATCAACAAGGCTCTCATGGTATCCTCCGCAATGCAAGCTGG
GACAGTTTGGATCAATTGTTACAATGCCTTAAATGCGCAGAGCCCCTTTGGGGGGTTCAAGATGTCTGGA
AATGGGAGAGAAATGGGTGAGTTTGGCTTACGGGAGTATTCAGAAGTAAAGACCGTGACGGTGAAGATCC
CCCAGAAGAACTCCTAA

Translation (518 aa):
MTSSEIAMPGEVKADPAALMASLQLLPSPTPNLEIKYTKIFINNEWQNSESGRVFPVCNPATGEQVCEVQ
EADKVDIDKAVQAARLAFSLGSVWRRMDASERGRLLDKLADLVERDRATLATMESLNGGKPFLQAFYIDL
QGVIKTLRYYAGWADKIHGMTIPVDGDYFTFTRHEPIGVCGQIIPWNFPLLMFTWKIAPALCCGNTVVIK
PAEQTPLSALYMGALIKEAGFPPGVVNILPGYGPTAGAAIASHIGIDKIAFTGSTEVGKLIQEAAGRSNL
KRVTLELGGKSPNIIFADADLDYAVEQAHQGVFFNQGQCCTAGSRIFVEESIYEEFVKRSVERAKRRIVG
SPFDPTTEQGPQIDKKQYNKVLELIQSGVAEGAKLECGGKGLGRKGFFIEPTVFSNVTDDMRIAKEEIFG
PVQEILRFKTMDEVIERANNSDFGLVAAVFTNDINKALMVSSAMQAGTVWINCYNALNAQSPFGGFKMSG
NGREMGEFGLREYSEVKTVTVKIPQKNS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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