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Report for CCDS52877.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52877.1 Public Mus musculus 9 Pgm3 23 108 98 CCDS HistoryNCBI Gene:109785Re-query CCDS DB by CCDS ID:52877.1Re-query CCDS DB by GeneID:109785See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52877.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000072585.7 ENSMUSP00000072390.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000072585.7Link to Ensembl Protein Viewer:ENSMUSP00000072390.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000072585Re-query CCDS DB by Protein ID:ENSMUSP00000072390
Original member Current member NCBI NM_001163746.1 NP_001157218.1 Accepted alive Link to Nucleotide Sequence:NM_001163746.1Link to Protein Sequence:NP_001157218.1Re-query CCDS DB by Nucleotide ID:NM_001163746Re-query CCDS DB by Protein ID:NP_001157218Link to BLAST:NP_001157218.1

Chromosomal Locations for CCDS 52877.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 86555314 86555403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86556192 86556365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86558395 86558508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86559415 86559513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86561821 86561904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86562536 86562693 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86564677 86564872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86565598 86565731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86567509 86567576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86569211 86569395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 86570202 86570405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1506 nt):
ATGGATCTGGAGGCTGTGTGTAAGCGCTCGGCACTCCATGCCAAGCCCCAGGGGCTCATTCTTCAGTATG
GGACTGCTGGATTTCGGACCAATGCCCAGCATCTCGATCATATCATGTTTCGAATGGGATTGCTAGCTGT
CCTGCGGTCAAAGCAAACAAGATCTACCATTGGAGTCATGGTTACGGCCTCACATAACCCTGAGGAAGAC
AATGGTGTGAAATTGGTTGATCCTTTGGGGGAAATGTTGGCCCCTTCCTGGGAGGAGCATGCCACCTGTC
TGGCCAGTGCGGAGGAGCAGGACGTGCGGCAAGTGCTTGCTGCCATCGTGGAGAAAGAAGCTGTGGATCT
GACACAGACCGCCTTCGTAGTCATTGCCAGAGACACCAGGCCCAGCAGTGAGAAACTTTCACAATCTGTG
ATAGATGGCGTGACTGTTTTAGGAGGTCAATTCCATGATTACGGCCTGTTGACGACACCTCAGTTGCACT
ACATGGTGTATTGCCGGAATTCCGGAGGCCGGTATGGACAGGCCACCGTAGAAGGCTACTGCCAGAAGCT
CTCCAAGGCTTTCGTAGACCTTACGAATCAGGTTTCCTGCAGTGGAGATGTAAAGAGGTCAGTTAAGGTT
GACTGTGCCAACGGCATAGGGGCCTTGAAGCTAAGAGAAATGGAACACTACTTCTCCCGGGGCCTGTCGG
TTCTGCTGTTTAATGATGGGACCCAAGGGCGGCTCAATCACCTGTGCGGTGCTGACTTTGTGAAAAGTCA
ACAGAAACCCCCACAGGGAATTGAAATGAAGTCCGGTGAGAGATGCTGCTCCTTCGATGGGGATGCGGAC
AGGATCGTGTATTACTACTGTGATGCAGATGGTCACTTTCATCTCATAGATGGAGACAAGATAGCGACGT
TAATTAGCAGTTTCCTTAAAGAGCTACTGTTGGAGATTGGAGAAAGTGTGAACCTCGGAGTCGTACAGAC
AGCATATGCAAATGGAAGTTCCACGCGGTACCTTGAAGAAGTTATGAAGGTACCTGTGTATTGCACCAAA
ACTGGTGTTAAACATTTGCATCACAAGGCTCAAGAGTTTGACATCGGAGTTTATTTTGAAGCGAACGGGC
ATGGAACAGCACTGTTCAGTGAAGCAGTTGAAGTGAAGATAAAAAGACTAGCCCAAGAACTAGACGATGG
AAAAGGAAAAGCAGCCAGGACGCTTGCGAGCATCATCGACTTATTCAACCAGGTCGCGGACAGGAGAGTT
ATTAGCACCACGGATGCTGAGAGACAAGCAGTCACTCCACCAGGACTCCAAGAGGCAATCAATGACCTGG
TGAAGAAATACACACTTGCCCGAGCTTTTGTACGGCCCTCTGGTACTGAAGACATTGTCCGAGTATATGC
AGAAGCCAACTCACAAGAAAGCGCAGACAGGCTTGCCTATGAAGTGAGTTTGCTGGTGTTCCAGCTGGCT
GGAGGCATTGGAGAAAGACCACAACCAACTTTCTGA

Translation (501 aa):
MDLEAVCKRSALHAKPQGLILQYGTAGFRTNAQHLDHIMFRMGLLAVLRSKQTRSTIGVMVTASHNPEED
NGVKLVDPLGEMLAPSWEEHATCLASAEEQDVRQVLAAIVEKEAVDLTQTAFVVIARDTRPSSEKLSQSV
IDGVTVLGGQFHDYGLLTTPQLHYMVYCRNSGGRYGQATVEGYCQKLSKAFVDLTNQVSCSGDVKRSVKV
DCANGIGALKLREMEHYFSRGLSVLLFNDGTQGRLNHLCGADFVKSQQKPPQGIEMKSGERCCSFDGDAD
RIVYYYCDADGHFHLIDGDKIATLISSFLKELLLEIGESVNLGVVQTAYANGSSTRYLEEVMKVPVYCTK
TGVKHLHHKAQEFDIGVYFEANGHGTALFSEAVEVKIKRLAQELDDGKGKAARTLASIIDLFNQVADRRV
ISTTDAERQAVTPPGLQEAINDLVKKYTLARAFVRPSGTEDIVRVYAEANSQESADRLAYEVSLLVFQLA
GGIGERPQPTF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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