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Report for CCDS52887.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52887.1 Public Mus musculus 9 Plod2 23 108 98 CCDS HistoryNCBI Gene:26432Re-query CCDS DB by CCDS ID:52887.1Re-query CCDS DB by GeneID:26432See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52887.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000160359.1 ENSMUSP00000125373.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000160359.1Link to Ensembl Protein Viewer:ENSMUSP00000125373.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000160359Re-query CCDS DB by Protein ID:ENSMUSP00000125373
Original member Current member NCBI NM_001142916.1 NP_001136388.1 Accepted alive Link to Nucleotide Sequence:NM_001142916.1Link to Protein Sequence:NP_001136388.1Re-query CCDS DB by Nucleotide ID:NM_001142916Re-query CCDS DB by Protein ID:NP_001136388Link to BLAST:NP_001136388.1

Chromosomal Locations for CCDS 52887.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 92542460 92542568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92571255 92571346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92573471 92573607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92581202 92581365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92584491 92584603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92586839 92586902 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92588601 92588698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92591300 92591401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92593745 92593870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92595262 92595383 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92596336 92596440 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92598588 92598713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92600741 92600882 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92601985 92602047 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92602948 92603061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92604779 92604844 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92605373 92605477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92606508 92606654 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92606764 92606889 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 92607075 92607230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2277 nt):
ATGGGGGACCGCGGAGCGAGGCCGGGGCGGCTGATGCCCATGCTCGCCCTGCTCTCCTGGGCGGCCGGCC
TGGGCGTGGCGGAGGAGACGCCCGGGCGCATCCCTGCAGATAAATTATTAGTCATAACTGTCGCAACAAA
AGAAAATGATGGATTCCACAGATTTATGAATTCAGCCAAGTATTTCAATTACACTGTGAAGGTTCTTGGT
CAAGGTCAGGAGTGGAGAGGCGGTGATGGAATGAACAGTATCGGAGGGGGCCAGAAGGTGAGATTACTGA
AAGAAGCTATGGAGCACTACGCCAGTCAGGAAGATCTGGTCATCTTGTTTACCGAGTGTTTTGATGTTGT
ATTTGCTGGTGGGCCTGAAGAAGTTCTTAAAAAGTTCCAAAAGACAAATCATAAAATCGTCTTTGCAGCG
GACGGGCTGCTGTGGCCAGATAAGCGGCTGGCAGACAAGTACCCTGTTGTGCACATTGGGAAACGCTACC
TGAATTCTGGAGGCTTTATTGGCTATGCCCCGTACATCAGCCGTCTGGTCCAGCAGTGGAATCTGCAGGA
TAATGATGATGATCAGCTCTTTTACACGAAAGTTTACATCGACCCACTGAAGAGGGAAGCTTTTAACATC
ACACTGGATCACAAATGCAAAATTTTCCAGGCCTTGAATGGAGCTACAGATGAAGTTGTTTTAAAGTTTG
AAAATGGTAAAAGCAGAGTGAAGAATACATTTTATGAAACACTGCCAGTGGCAATTAATGGAAATGGGCC
CACCAAGATTCTCCTGAATTACTTTGGAAACTATGTTCCAAACTCATGGACACAGGAAAATGGCTGTGCG
CTTTGTGATGTTGACACAATTGACTTGTCTACAGTAGATGTCCCTCCCAAGGTTACACTGGGTGTTTTTA
TTGAACAACCAACCCCCTTTCTACCTCGATTCCTGAACTTACTGTTAACACTGGATTATCCCAAAGAAGC
CCTTCAACTCTTTATTCATAATAAAGAAGTTTATCATGAAAAGGACATCAAAGTGTTTGTTGATAAAGCT
AAGCATGACATCAGCTCTATAAAAATAGTAGGACCAGAGGAGAACCTAAGTCAAGCAGAAGCCAGGAACA
TGGGCATGGATTTCTGCCGTCAGGATGAAAAGTGTGATTACTACTTTAGTGTGGATGCAGATGTTGTTTT
GACAAACCCAAGAACTTTAAAATTTTTGATTGAACAAAACAGGAAAATCATTGCTCCTCTTGTGACACGT
CATGGAAAGTTGTGGTCCAACTTTTGGGGAGCACTGAGTCCTGATGGGTACTATGCTCGCTCTGAAGATT
ACGTGGATATTGTTCAGGGGAACAGAGTAGGAATCTGGAATGTCCCATATATGGCTAATGTGTACTTAAT
TCAAGGAAAGACACTCCGATCTGAGATGAATGAAAGGAACTATTTTGTCCGTGATAAGTTGGATCCCGAT
ATGGCTCTTTGCCGCAATGCTAGAGATATGACCTTACAAAGGGAAAAAGACTCCCCTACTCCGGAAACAT
TCCAAATGCTCAGCCCCCCAAAGGGTGTGTTTATGTACATTTCTAACAGACATGAATTTGGACGGCTGAT
ATCAACTGCTAATTACAACACTTCCCATCTTAACAATGACTTCTGGCAGATTTTTGAAAATCCCGTGGAT
TGGAAGGAAAAATATATAAATCGTGATTATTCAAAGATTTTCACTGAAAATATAGTCGAGCAGCCTTGTC
CAGATGTCTTCTGGTTTCCCATATTTTCTGAACGAGCCTGTGATGAGTTGGTAGAAGAAATGGAGCATTA
TGGCAAGTGGTCCGGCGGAAAGCATCACGATAGCCGCATATCGGGTGGTTATGAAAATGTCCCGACTGAC
GATATTCATATGAAGCAGATCGGGCTGGAGAATGTTTGGCTTCATTTCATCCGAGAGTTCATTGCTCCAG
TCACACTGAAGGTCTTCGCAGGCTATTATACAAAGGGATTTGCACTGCTGAATTTTGTAGTAAAGTACTC
ACCTGAAAGACAGCGCTCGCTCCGTCCCCACCACGATGCCTCAACCTTTACCATCAACATTGCTCTGAAT
AATGTAGGAGAGGATTTTCAGGGAGGTGGATGCAAATTTCTGAGGTATAATTGCTCCATTGAGTCCCCAC
GAAAAGGCTGGAGCTTCATGCATCCTGGGAGGCTCACACATTTGCACGAAGGACTTCCTGTTAAAAATGG
AACACGATACATTGCAGTGTCATTTATAGATCCCTAA

Translation (758 aa):
MGDRGARPGRLMPMLALLSWAAGLGVAEETPGRIPADKLLVITVATKENDGFHRFMNSAKYFNYTVKVLG
QGQEWRGGDGMNSIGGGQKVRLLKEAMEHYASQEDLVILFTECFDVVFAGGPEEVLKKFQKTNHKIVFAA
DGLLWPDKRLADKYPVVHIGKRYLNSGGFIGYAPYISRLVQQWNLQDNDDDQLFYTKVYIDPLKREAFNI
TLDHKCKIFQALNGATDEVVLKFENGKSRVKNTFYETLPVAINGNGPTKILLNYFGNYVPNSWTQENGCA
LCDVDTIDLSTVDVPPKVTLGVFIEQPTPFLPRFLNLLLTLDYPKEALQLFIHNKEVYHEKDIKVFVDKA
KHDISSIKIVGPEENLSQAEARNMGMDFCRQDEKCDYYFSVDADVVLTNPRTLKFLIEQNRKIIAPLVTR
HGKLWSNFWGALSPDGYYARSEDYVDIVQGNRVGIWNVPYMANVYLIQGKTLRSEMNERNYFVRDKLDPD
MALCRNARDMTLQREKDSPTPETFQMLSPPKGVFMYISNRHEFGRLISTANYNTSHLNNDFWQIFENPVD
WKEKYINRDYSKIFTENIVEQPCPDVFWFPIFSERACDELVEEMEHYGKWSGGKHHDSRISGGYENVPTD
DIHMKQIGLENVWLHFIREFIAPVTLKVFAGYYTKGFALLNFVVKYSPERQRSLRPHHDASTFTINIALN
NVGEDFQGGGCKFLRYNCSIESPRKGWSFMHPGRLTHLHEGLPVKNGTRYIAVSFIDP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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