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Report for CCDS53220.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53220.1 Public Mus musculus X Alas2 23 108 98 CCDS HistoryNCBI Gene:11656Re-query CCDS DB by CCDS ID:53220.1Re-query CCDS DB by GeneID:11656See the combined annotation on chromosome X in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53220.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112715.1 ENSMUSP00000108335.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112715.1Link to Ensembl Protein Viewer:ENSMUSP00000108335.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112715Re-query CCDS DB by Protein ID:ENSMUSP00000108335
Original member NCBI NM_001102446.1 NP_001095916.1 Updated not alive Link to Nucleotide Sequence:NM_001102446.1Link to Protein Sequence:NP_001095916.1Re-query CCDS DB by Nucleotide ID:NM_001102446Re-query CCDS DB by Protein ID:NP_001095916
Current member NCBI NM_001102446.2 NP_001095916.1 Accepted alive Link to Nucleotide Sequence:NM_001102446.2Link to Protein Sequence:NP_001095916.1Re-query CCDS DB by Nucleotide ID:NM_001102446Re-query CCDS DB by Protein ID:NP_001095916Link to BLAST:NP_001095916.1

Chromosomal Locations for CCDS 53220.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome X (NC_000086.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome XSee the combined annotation on chromosome X in Sequence Viewer

Chromosome Start Stop Links
X 150552164 150552344 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150553004 150553081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150553933 150554043 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150557186 150557408 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150557939 150558123 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150560734 150560913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150563761 150563925 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150565007 150565275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150566501 150566663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X
X 150570328 150570491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome XLink to Ensembl Genome Browser on chromosome X

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1719 nt):
ATGGTGGCAGCAGCTATGTTGCTACGGTCCTGTCCAGTGCTCTCTCAGGGCCCCACAGGCCTCCTGGGCA
AAGTGGCTAAAACCTACCAGTTCCTATTTAGTATTGGACGCTGCCCCATCCTGGCCACTCAAGGACCAAC
CTGTTCTCAAATCCATCTTAAGGCAACCAAGGCTGGAGGAGAACTCCAAGACAGGAAGAGCAAGATTGTG
CAGAGGGCAGCTCCAGAAGTTCAAGAGGATGTCAAGACTTTCAAGACAGACCTGCTGAGCACCATGGATT
CAACCACCCGAAGCCATTCATTTCCTAGTTTCCAGGAGCCAGAGCAGACTGAAGGGGCAGTTCCCCACCT
GATTCAGAACAATATGACTGGAAGCCAGGCTTTCGGTTATGACCAATTTTTCAGAGACAAGATCATGGAG
AAGAAACAGGACCACACCTACCGTGTGTTCAAGACTGTGAATCGTTGGGCTAATGCCTACCCCTTTGCCC
AACACTTCTCCGAGGCATCTATGGCATCAAAGGATGTTTCTGTTTGGTGTAGTAATGACTATTTGGGCAT
AAGCAGACACCCTCGTGTCTTGCAGGCCATAGAGGAGACCCTGAAGAATCATGGAGCTGGAGCTGGGGGC
ACTCGCAATATCTCAGGTACCAGCAAGTTTCATGTGGAGCTTGAACAGGAGCTGGCTGAACTACACCAGA
AAGACTCAGCTCTGCTCTTCTCCTCCTGTTTTGTGGCCAATGATTCTACTCTCTTTACACTGGCCAAGCT
TCTGCCAGGGTGTGAGATCTACTCAGATGCAGGCAATCATGCCTCCATGATCCAAGGCATTCGCAACAGT
GGTGCAGCCAAGTTTGTCTTCAGACACAATGACCCAGGCCACCTGAAGAAACTTCTCGAGAAGTCTGATC
CCAAGACACCAAAAATTGTGGCTTTTGAGACTGTTCATTCCATGGATGGTGCCATCTGTCCTCTGGAGGA
ATTGTGTGATGTGGCCCACCAGTATGGAGCCCTGACCTTCGTAGATGAAGTCCATGCTGTAGGACTGTAT
GGAGCCCGGGGTGCAGGTATCGGGGAGCGTGATGGAATTATGCACAAGCTTGACATCATCTCTGGAACTC
TTGGCAAGGCCTTTGGTTGCGTCGGTGGCTATATAGCCAGCACTCGGGACTTGGTGGACATGGTGCGCTC
CTACGCTGCAGGCTTCATCTTTACCACTTCACTGCCTCCCATGGTGCTCTCTGGGGCTCTAGAATCTGTG
CGCCTACTCAAGGGAGAGGAGGGTCAAGCCCTGAGGCGGGCACACCAGCGCAATGTCAAACACATGCGCC
AGCTGCTAATGGACAGGGGCTTTCCTGTTATCCCCTGTCCCAGCCACATCATCCCCATCAGGGTGGGTAA
TGCAGCACTCAACAGCAAGATCTGTGATCTTCTGCTCTCCAAGCACAGCATCTATGTGCAGGCCATCAAC
TACCCAACTGTGCCTCGTGGTGAGGAGCTACTGCGCTTGGCCCCCTCCCCCCACCACAGCCCTCAGATGA
TGGAAAACTTTGTGGAGAAGCTGCTGCTGGCCTGGACTGAGGTGGGGCTGCCCCTCCAAGATGTGTCTGT
GGCTGCATGCAACTTCTGTCATCGTCCTGTGCACTTTGAACTTATGAGCGAGTGGGAGCGATCCTACTTT
GGGAACATGGGACCCCAATATGTTACCACCTATGCTTAA

Translation (572 aa):
MVAAAMLLRSCPVLSQGPTGLLGKVAKTYQFLFSIGRCPILATQGPTCSQIHLKATKAGGELQDRKSKIV
QRAAPEVQEDVKTFKTDLLSTMDSTTRSHSFPSFQEPEQTEGAVPHLIQNNMTGSQAFGYDQFFRDKIME
KKQDHTYRVFKTVNRWANAYPFAQHFSEASMASKDVSVWCSNDYLGISRHPRVLQAIEETLKNHGAGAGG
TRNISGTSKFHVELEQELAELHQKDSALLFSSCFVANDSTLFTLAKLLPGCEIYSDAGNHASMIQGIRNS
GAAKFVFRHNDPGHLKKLLEKSDPKTPKIVAFETVHSMDGAICPLEELCDVAHQYGALTFVDEVHAVGLY
GARGAGIGERDGIMHKLDIISGTLGKAFGCVGGYIASTRDLVDMVRSYAAGFIFTTSLPPMVLSGALESV
RLLKGEEGQALRRAHQRNVKHMRQLLMDRGFPVIPCPSHIIPIRVGNAALNSKICDLLLSKHSIYVQAIN
YPTVPRGEELLRLAPSPHHSPQMMENFVEKLLLAWTEVGLPLQDVSVAACNFCHRPVHFELMSEWERSYF
GNMGPQYVTTYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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