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Report for CCDS5333.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5333.1 Public Homo sapiens 7 CHST12 24 110 108 CCDS HistoryNCBI Gene:55501Re-query CCDS DB by CCDS ID:5333.1Re-query CCDS DB by GeneID:55501See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5333.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258711.7 ENSP00000258711.6 Accepted alive Link to Ensembl Transcript Viewer:ENST00000258711.7Link to Ensembl Protein Viewer:ENSP00000258711.6Re-query CCDS DB by Nucleotide ID:ENST00000258711Re-query CCDS DB by Protein ID:ENSP00000258711
Original member Current member EBI ENST00000618655.2 ENSP00000481912.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000618655.2Link to Ensembl Protein Viewer:ENSP00000481912.1Re-query CCDS DB by Nucleotide ID:ENST00000618655Re-query CCDS DB by Protein ID:ENSP00000481912
Original member Current member NCBI NM_001243794.2 NP_001230723.1 Accepted alive Link to Nucleotide Sequence:NM_001243794.2Link to Protein Sequence:NP_001230723.1Re-query CCDS DB by Nucleotide ID:NM_001243794Re-query CCDS DB by Protein ID:NP_001230723Link to BLAST:NP_001230723.1
Original member Current member NCBI NM_001243795.2 NP_001230724.1 Accepted alive Link to Nucleotide Sequence:NM_001243795.2Link to Protein Sequence:NP_001230724.1Re-query CCDS DB by Nucleotide ID:NM_001243795Re-query CCDS DB by Protein ID:NP_001230724Link to BLAST:NP_001230724.1
Original member Current member NCBI NM_018641.5 NP_061111.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_018641.5Link to Protein Sequence:NP_061111.1Re-query CCDS DB by Nucleotide ID:NM_018641Re-query CCDS DB by Protein ID:NP_061111Link to BLAST:NP_061111.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230723.1 414 Q9NRB3 414 100% 0 0
NP_001230724.1 414 Q9NRB3 414 100% 0 0
NP_061111.1 414 Q9NRB3 414 100% 0 0

Chromosomal Locations for CCDS 5333.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 2432640 2433884 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1245 nt):
ATGACCAAGGCCCGGCTGTTCCGGCTGTGGCTGGTGCTGGGGTCGGTGTTCATGATCCTGCTGATCATCG
TGTACTGGGACAGCGCAGGCGCCGCGCACTTCTACTTGCACACGTCCTTCTCTAGGCCGCACACGGGGCC
GCCGCTGCCCACGCCCGGGCCGGACAGGGACAGGGAGCTCACGGCCGACTCCGATGTCGACGAGTTTCTG
GACAAGTTTCTCAGTGCTGGCGTGAAGCAGAGCGACCTTCCCAGAAAGGAGACGGAGCAGCCGCCTGCGC
CGGGGAGCATGGAGGAGAGCGTGAGAGGCTACGACTGGTCCCCGCGCGACGCCCGGCGCAGCCCAGACCA
GGGCCGGCAGCAGGCGGAGCGGAGGAGCGTGCTGCGGGGCTTCTGCGCCAACTCCAGCCTGGCCTTCCCC
ACCAAGGAGCGCGCATTCGACGACATCCCCAACTCGGAGCTGAGCCACCTGATCGTGGACGACCGGCACG
GGGCCATCTACTGCTACGTGCCCAAGGTGGCCTGCACCAACTGGAAGCGCGTGATGATCGTGCTGAGCGG
AAGCCTGCTGCACCGCGGTGCGCCCTACCGCGACCCGCTGCGCATCCCGCGCGAGCACGTGCACAACGCC
AGCGCGCACCTGACCTTCAACAAGTTCTGGCGCCGCTACGGGAAGCTCTCCCGCCACCTCATGAAGGTCA
AGCTCAAGAAGTACACCAAGTTCCTCTTCGTGCGCGACCCCTTCGTGCGCCTGATCTCCGCCTTCCGCAG
CAAGTTCGAGCTGGAGAACGAGGAGTTCTACCGCAAGTTCGCCGTGCCCATGCTGCGGCTGTACGCCAAC
CACACCAGCCTGCCCGCCTCGGCGCGCGAGGCCTTCCGCGCTGGCCTCAAGGTGTCCTTCGCCAACTTCA
TCCAGTACCTGCTGGACCCGCACACGGAGAAGCTGGCGCCCTTCAACGAGCACTGGCGGCAGGTGTACCG
CCTCTGCCACCCGTGCCAGATCGACTACGACTTCGTGGGGAAGCTGGAGACTCTGGACGAGGACGCCGCG
CAGCTGCTGCAGCTACTCCAGGTGGACCGGCAGCTCCGCTTCCCCCCGAGCTACCGGAACAGGACCGCCA
GCAGCTGGGAGGAGGACTGGTTCGCCAAGATCCCCCTGGCCTGGAGGCAGCAGCTGTATAAACTCTACGA
GGCCGACTTTGTTCTCTTCGGCTACCCCAAGCCCGAAAACCTCCTCCGAGACTGA

Translation (414 aa):
MTKARLFRLWLVLGSVFMILLIIVYWDSAGAAHFYLHTSFSRPHTGPPLPTPGPDRDRELTADSDVDEFL
DKFLSAGVKQSDLPRKETEQPPAPGSMEESVRGYDWSPRDARRSPDQGRQQAERRSVLRGFCANSSLAFP
TKERAFDDIPNSELSHLIVDDRHGAIYCYVPKVACTNWKRVMIVLSGSLLHRGAPYRDPLRIPREHVHNA
SAHLTFNKFWRRYGKLSRHLMKVKLKKYTKFLFVRDPFVRLISAFRSKFELENEEFYRKFAVPMLRLYAN
HTSLPASAREAFRAGLKVSFANFIQYLLDPHTEKLAPFNEHWRQVYRLCHPCQIDYDFVGKLETLDEDAA
QLLQLLQVDRQLRFPPSYRNRTASSWEEDWFAKIPLAWRQQLYKLYEADFVLFGYPKPENLLRD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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