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Report for CCDS5340.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
5340.1 Public Homo sapiens 7 SLC29A4 24 110 108 CCDS HistoryNCBI Gene:222962Re-query CCDS DB by CCDS ID:5340.1Re-query CCDS DB by GeneID:222962See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 5340.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000297195.8 ENSP00000297195.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000297195.8Link to Ensembl Protein Viewer:ENSP00000297195.4Re-query CCDS DB by Nucleotide ID:ENST00000297195Re-query CCDS DB by Protein ID:ENSP00000297195
Original member Current member EBI ENST00000396872.8 ENSP00000380081.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000396872.8Link to Ensembl Protein Viewer:ENSP00000380081.2Re-query CCDS DB by Nucleotide ID:ENST00000396872Re-query CCDS DB by Protein ID:ENSP00000380081
Original member Current member NCBI NM_001040661.3 NP_001035751.1 Accepted alive Link to Nucleotide Sequence:NM_001040661.3Link to Protein Sequence:NP_001035751.1Re-query CCDS DB by Nucleotide ID:NM_001040661Re-query CCDS DB by Protein ID:NP_001035751Link to BLAST:NP_001035751.1
Original member Current member NCBI NM_153247.4 NP_694979.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_153247.4Link to Protein Sequence:NP_694979.2Re-query CCDS DB by Nucleotide ID:NM_153247Re-query CCDS DB by Protein ID:NP_694979Link to BLAST:NP_694979.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001035751.1 530 Q7RTT9-1 530 100% 0 0
NP_694979.2 530 Q7RTT9-1 530 100% 0 0

Chromosomal Locations for CCDS 5340.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 7 (NC_000007.14)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5287817 5287985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5290732 5290863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5291124 5291237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5291693 5291821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5294860 5294934 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5296936 5297198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5298988 5299126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5299240 5299427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5300422 5300662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 5302797 5302939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1593 nt):
ATGGGCTCCGTGGGGAGCCAGCGCCTTGAGGAGCCCAGCGTGGCAGGCACACCAGACCCGGGCGTAGTGA
TGAGCTTCACCTTCGACAGTCACCAGCTGGAGGAGGCGGCGGAGGCGGCTCAGGGCCAGGGCCTTAGGGC
CAGGGGCGTCCCAGCTTTCACGGATACTACATTGGACGAGCCAGTGCCCGATGACCGTTATCACGCCATC
TACTTTGCGATGCTGCTGGCTGGCGTGGGCTTCCTGCTGCCATACAACAGCTTCATCACGGACGTGGACT
ACCTGCATCACAAGTACCCAGGGACCTCCATCGTGTTTGACATGAGCCTCACCTACATCTTGGTGGCACT
GGCAGCTGTCCTCCTGAACAACGTCCTGGTGGAGAGACTGACCCTGCACACCAGGATCACCGCAGGCTAC
CTCTTAGCCTTGGGCCCTCTCCTTTTTATCAGCATCTGCGACGTGTGGCTGCAGCTCTTCTCTCGGGACC
AGGCCTACGCCATCAACCTGGCCGCTGTGGGCACCGTGGCCTTCGGCTGCACAGTGCAGCAATCCAGCTT
CTACGGGTACACGGGGATGCTGCCCAAGCGGTACACGCAGGGGGTGATGACCGGGGAGAGCACGGCGGGC
GTGATGATCTCTCTGAGCCGCATCCTCACGAAGCTGCTGCTGCCCGACGAGCGCGCCAGCACGCTCATCT
TCTTCCTGGTGTCGGTGGCGCTGGAGCTGCTGTGTTTCCTGCTGCACCTGTTAGTGCGGCGCAGCCGCTT
CGTGCTCTTCTATACCACACGGCCGCGTGACAGCCACCGGGGCAGGCCAGGCCTGGGCAGGGGCTATGGC
TACCGCGTGCACCACGACGTTGTCGCCGGGGACGTCCACTTCGAGCACCCAGCCCCGGCCCTGGCCCCCA
ACGAGTCCCCAAAGGACAGCCCAGCCCACGAGGTGACCGGCAGCGGCGGGGCCTACATGCGCTTTGATGT
GCCGCGGCCAAGGGTCCAGCGCAGCTGGCCCACCTTCAGAGCCCTGTTACTGCACCGCTACGTGGTGGCG
CGGGTGATCTGGGCCGACATGCTCTCCATCGCCGTGACCTACTTCATCACGCTGTGCCTGTTCCCCGGCC
TCGAGTCTGAGATCCGCCACTGCATCCTGGGCGAGTGGCTGCCCATCCTCATCATGGCTGTGTTCAACCT
GTCAGACTTCGTGGGCAAGATCCTGGCAGCCCTGCCCGTGGACTGGCGGGGCACCCACCTGCTGGCCTGC
TCCTGCCTGCGTGTGGTCTTCATCCCCCTCTTCATCCTGTGCGTCTACCCCAGCGGCATGCCCGCCCTCC
GTCACCCCGCCTGGCCCTGCATCTTCTCACTGCTCATGGGCATCAGCAACGGCTACTTCGGCAGCGTGCC
CATGATCCTGGCGGCAGGCAAAGTGAGCCCCAAGCAGCGGGAGCTGGCAGGGAACACCATGACCGTGTCC
TACATGTCAGGGCTGACGCTGGGGTCCGCCGTGGCCTACTGCACCTACAGCCTCACCCGCGACGCTCACG
GCAGCTGCCTGCACGCCTCCACCGCCAATGGTTCCATCCTCGCAGGCCTCTGA

Translation (530 aa):
MGSVGSQRLEEPSVAGTPDPGVVMSFTFDSHQLEEAAEAAQGQGLRARGVPAFTDTTLDEPVPDDRYHAI
YFAMLLAGVGFLLPYNSFITDVDYLHHKYPGTSIVFDMSLTYILVALAAVLLNNVLVERLTLHTRITAGY
LLALGPLLFISICDVWLQLFSRDQAYAINLAAVGTVAFGCTVQQSSFYGYTGMLPKRYTQGVMTGESTAG
VMISLSRILTKLLLPDERASTLIFFLVSVALELLCFLLHLLVRRSRFVLFYTTRPRDSHRGRPGLGRGYG
YRVHHDVVAGDVHFEHPAPALAPNESPKDSPAHEVTGSGGAYMRFDVPRPRVQRSWPTFRALLLHRYVVA
RVIWADMLSIAVTYFITLCLFPGLESEIRHCILGEWLPILIMAVFNLSDFVGKILAALPVDWRGTHLLAC
SCLRVVFIPLFILCVYPSGMPALRHPAWPCIFSLLMGISNGYFGSVPMILAAGKVSPKQRELAGNTMTVS
YMSGLTLGSAVAYCTYSLTRDAHGSCLHASTANGSILAGL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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