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Report for CCDS53494.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
53494.1 Public Homo sapiens 10 SUV39H2 24 110 108 CCDS HistoryNCBI Gene:79723Re-query CCDS DB by CCDS ID:53494.1Re-query CCDS DB by GeneID:79723See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 8, NCBI annotation release 37.2, Ensembl annotation release 62

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 53494.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354919.11 ENSP00000346997.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354919.11Link to Ensembl Protein Viewer:ENSP00000346997.6Re-query CCDS DB by Nucleotide ID:ENST00000354919Re-query CCDS DB by Protein ID:ENSP00000346997
Original member Current member NCBI NM_001193424.2 NP_001180353.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001193424.2Link to Protein Sequence:NP_001180353.1Re-query CCDS DB by Nucleotide ID:NM_001193424Re-query CCDS DB by Protein ID:NP_001180353Link to BLAST:NP_001180353.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001180353.1 410 Q9H5I1-1 410 100% 0 0

Chromosomal Locations for CCDS 53494.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 14878889 14878919 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14881500 14881645 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14896846 14897517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14899539 14899685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14901133 14901262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 14902406 14902512 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1233 nt):
ATGGCGGCGGTCGGGGCCGAGGCGCGAGGAGCTTGGTGTGTGCCTTGCCTAGTTTCACTTGATACTCTTC
AGGAATTATGTAGAAAAGAAAAGCTCACATGTAAATCGATTGGAATCACCAAAAGGAATCTAAACAATTA
TGAGGTGGAATACTTGTGTGACTACAAGGTAGTAAAGGATATGGAATATTATCTTGTAAAATGGAAAGGA
TGGCCAGATTCTACAAATACTTGGGAACCTTTGCAAAATCTGAAGTGCCCGTTACTGCTTCAGCAATTCT
CTAATGACAAGCATAATTATTTATCTCAGGTAAAGAAAGGCAAAGCAATAACTCCAAAAGACAATAACAA
AACTTTGAAACCTGCCATTGCTGAGTACATTGTGAAGAAGGCTAAACAAAGGATAGCTCTGCAGAGATGG
CAAGATGAACTCAACAGAAGAAAGAATCATAAAGGAATGATATTTGTTGAAAATACTGTTGATTTAGAGG
GCCCACCTTCAGACTTCTATTACATTAACGAATACAAACCAGCTCCTGGAATCAGCTTAGTCAATGAAGC
TACCTTTGGTTGTTCATGCACAGATTGCTTCTTTCAAAAATGTTGTCCTGCTGAAGCTGGAGTTCTTTTG
GCTTATAATAAAAACCAACAAATTAAAATCCCACCTGGTACTCCCATCTATGAATGCAACTCAAGGTGTC
AGTGTGGTCCTGATTGTCCCAATAGGATTGTACAAAAAGGCACACAGTATTCGCTTTGCATCTTTCGAAC
TAGCAATGGACGTGGCTGGGGTGTAAAGACCCTTGTGAAGATTAAAAGAATGAGTTTTGTCATGGAATAT
GTTGGAGAGGTAATCACAAGTGAAGAAGCTGAAAGACGAGGACAGTTCTATGACAACAAGGGAATCACGT
ATCTCTTTGATCTGGACTATGAGTCTGATGAATTCACAGTGGATGCGGCTCGATACGGCAATGTGTCTCA
TTTTGTGAATCACAGCTGTGACCCAAATCTTCAGGTGTTCAATGTTTTCATTGATAACCTCGATACTCGT
CTTCCCCGAATAGCATTGTTTTCCACAAGAACCATAAATGCTGGAGAAGAGCTGACTTTTGATTATCAAA
TGAAAGGTTCTGGAGATATATCTTCAGATTCTATTGACCACAGCCCAGCCAAAAAGAGGGTCAGAACAGT
ATGTAAATGTGGAGCTGTGACTTGCAGAGGTTACCTCAACTGA

Translation (410 aa):
MAAVGAEARGAWCVPCLVSLDTLQELCRKEKLTCKSIGITKRNLNNYEVEYLCDYKVVKDMEYYLVKWKG
WPDSTNTWEPLQNLKCPLLLQQFSNDKHNYLSQVKKGKAITPKDNNKTLKPAIAEYIVKKAKQRIALQRW
QDELNRRKNHKGMIFVENTVDLEGPPSDFYYINEYKPAPGISLVNEATFGCSCTDCFFQKCCPAEAGVLL
AYNKNQQIKIPPGTPIYECNSRCQCGPDCPNRIVQKGTQYSLCIFRTSNGRGWGVKTLVKIKRMSFVMEY
VGEVITSEEAERRGQFYDNKGITYLFDLDYESDEFTVDAARYGNVSHFVNHSCDPNLQVFNVFIDNLDTR
LPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVTCRGYLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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